Locus 7995

Sequence ID 3R_DroMel_CAF1
Location 21,446,834 – 21,446,943
Length 109
Max. P 0.922612
window12871

overview

Window 1

Location 21,446,834 – 21,446,943
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 94.12
Mean single sequence MFE -19.24
Consensus MFE -15.54
Energy contribution -16.58
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.97
Structure conservation index 0.81
SVM decision value 1.15
SVM RNA-class probability 0.922612
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21446834 109 - 27905053
UUCCUUUACAUCGCUAAGGUCAUAUUAUUACUUGAUUCCCUUAUUUUUAUGGAUGGCUAUUCUUGGCGUUCAUUAUUUCAUCCAUCACAAACAUAGCCUUAGUUAUGAU
........(((.(((((((..((((((.....))))............(((((((((((....))))...........))))))).......))..))))))).))).. ( -20.90)
>DroSec_CAF1 53714 109 - 1
UUCCUUUACAUCGCUAAGGUCAUAUUAUUACUUGAUUCCCUUAUUUUUAUGGAUGGCUAUUCUUGGCGUUCAAUUUUUCAUCCAUCACAAACAUAGCCUUAGUUAUGAU
........(((.(((((((..((((((.....))))............(((((((((((....))))...........))))))).......))..))))))).))).. ( -20.90)
>DroSim_CAF1 38256 109 - 1
UUCCUUUACAUCGCUAAGGUCAUAUUAUUACUUGAUUCCCUUAUUUUUAUGGAUGGCUAUUCUUGGCGUUCAAUUUUUCAUCCAUCACAAACAUAGCCUUAGUUAUGAU
........(((.(((((((..((((((.....))))............(((((((((((....))))...........))))))).......))..))))))).))).. ( -20.90)
>DroEre_CAF1 55056 108 - 1
UUCCUUUACUUCGCUAAGGUGCUAUUAUUACUUGAUUCCCUUAUU-UUAUGGAUGGCUGCUCUUGGCGUUCAUUAUUUCUUCCAUCACAAACAUAGCCUUAGUUAUGAU
...........(((((((((((((((.......(((......)))-.....)))))).)).))))))).......................((((((....)))))).. ( -20.20)
>DroYak_CAF1 44751 108 - 1
UUCCUUUACUUCGCAAAGGUGCUAUUAUUACUUGAUUCCCUUAUU-UUAUGGAUGGCUACUCUUGGCGUUCACUGUUUCUUCCAUCACAAACAUAGCCUUACUUAUGAU
...........(((.(((((((((((.......(((......)))-.....)))))).)).))).))).......................(((((......))))).. ( -13.30)
>consensus
UUCCUUUACAUCGCUAAGGUCAUAUUAUUACUUGAUUCCCUUAUUUUUAUGGAUGGCUAUUCUUGGCGUUCAAUAUUUCAUCCAUCACAAACAUAGCCUUAGUUAUGAU
........(((.((((((((...((((.....))))............(((((((((((....))))...........)))))))..........)))))))).))).. (-15.54 = -16.58 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:51 2006