Locus 7994

Sequence ID 3R_DroMel_CAF1
Location 21,442,688 – 21,442,785
Length 97
Max. P 0.657027
window12870

overview

Window 0

Location 21,442,688 – 21,442,785
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 71.56
Mean single sequence MFE -16.98
Consensus MFE -3.32
Energy contribution -3.76
Covariance contribution 0.44
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.20
SVM decision value 0.26
SVM RNA-class probability 0.657027
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21442688 97 - 27905053
UUACUUUCCCCCUUUCUCUCAAAAUUAUGCAAAUUCCUUAAGCUGCCUGCGAAUUCGGCUG--GCCCCAGCAAUUACAGCAGGAACUUCCUUAUGCGUU
..........................(((((........(((...(((((.......((((--....)))).......)))))..))).....))))). ( -19.36)
>DroSec_CAF1 49600 84 - 1
UUACUUUCCCCCUUUCUCUCAAAAUUAUGCAAAUUCCUUGAGCUGCCUG---------------CCCCAGCAAUUACAGCAGGAACUACCUUAUGCAUU
..........................(((((..........((((..((---------------(....)))....))))(((.....)))..))))). ( -12.00)
>DroEre_CAF1 50913 95 - 1
CUACUUUCGCCCUUUCUC-CGAAAUUAUGCAAAUUCCUUAAGCUGCCUGCGAAUUCAGCUG--GCUCCAGCAAUUAGAGGCGGAACUUCCU-AUGCAUC
....(((((.........-)))))..(((((...........((((((.(.((((..((((--....)))))))).)))))))........-.))))). ( -20.05)
>DroYak_CAF1 40560 95 - 1
UUACUUUCGCCCUUUCUC-CGAAAUUAUGCAAAUUCCUUAAGCUGCCUGCGAAUUCAGCUACAGCUCC---AAUUACAGGCGCAACUUCCUUUUGCAUC
....(((((.........-)))))..(((((((........((.(((((..(....(((....)))..---..)..)))))))........))))))). ( -20.09)
>DroAna_CAF1 129040 87 - 1
UUUCUUUUCUUUUUUUUUUUGCAAUUAUGCAAAUGUCCUAAGCCGUCUGCAG------------CUUCAGCAAUUAUCGUGUGGAGUCCUCCUUGCAUU
...................(((((...((((.(((........))).))))(------------(((((((.......)).)))))).....))))).. ( -13.40)
>consensus
UUACUUUCCCCCUUUCUCUCGAAAUUAUGCAAAUUCCUUAAGCUGCCUGCGAAUUC_GCU___GCUCCAGCAAUUACAGCAGGAACUUCCUUAUGCAUU
..........................(((((..........((.....))...............................((.....))...))))). ( -3.32 =  -3.76 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:50 2006