Locus 7993

Sequence ID 3R_DroMel_CAF1
Location 21,439,959 – 21,440,049
Length 90
Max. P 0.792370
window12869

overview

Window 9

Location 21,439,959 – 21,440,049
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.03
Mean single sequence MFE -19.65
Consensus MFE -9.59
Energy contribution -9.76
Covariance contribution 0.17
Combinations/Pair 1.20
Mean z-score -2.55
Structure conservation index 0.49
SVM decision value 0.59
SVM RNA-class probability 0.792370
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21439959 90 + 27905053
AAAAAAAAAAUCAGUCCCAAGAGUGAGAGUAAAAUAUUCAAAGCUUUCACCUCCUGCAAGUGCACCCAAAAGU------AGGAGUAGCAUCACGUG
......................(((((((((...)))))...(((.....(((((((...((....))...))------))))).))).))))... ( -18.40)
>DroSec_CAF1 46865 90 + 1
AAAAAGAAAAUCAGUCUCAAGAGUGAGAGUAAAAUAUUCAAAGCUUUCACCUCCUGCAAGUGCACCCAAAAGU------AGGAGUAACAUCACGUG
....................((((((((((............))))))))(((((((...((....))...))------))))).....))..... ( -18.20)
>DroEre_CAF1 48254 96 + 1
AAAAAGAAAAUCAGUCCCAAGAGUGAGAGUAAAAUAUUCAAGGCUUUCACCUCCUGCAAGUGCGCCCAAAAGUAGUAGUAGGAGUGGGAUCACGUG
.............((((((...((((((((............))))))))(((((((.(.(((........))).).)))))))))))))...... ( -30.10)
>DroWil_CAF1 143639 89 + 1
AAAAAGAAAAUCAGUCCAAAAAGUGAAAGUAAAAUAUUGAAAGCUUUUACCUCAUGCAAAUGCACACAGAGAGAGCAAAAAGAGUUAAA-------
.............(..(.....((((((((............))))))))(((.(((....)))....))).)..).............------- ( -10.50)
>DroYak_CAF1 37808 90 + 1
AAAAAGAAAAUCAGUCCCAAGAGUGAGAGUAAAAUAUUCAAAGCGUUCACCUCCUGCAAGUGCACCCAAAAGU------AGGAGUUGGUUCACGUG
..........(((.((....)).)))(((((...)))))...(((((((.(((((((...((....))...))------))))).)))...)))). ( -19.60)
>DroAna_CAF1 126149 96 + 1
AAGAAGAAAAUCAGUCCAAAAAGUGAAAGUAAAAUAUUCAAAGCUUUCACCUUGUGCAAGUGCACAAAAAAGGAUAAAAAAUAGUUUCAACAAAUA
..((((.......((((.....((((((((............)))))))).((((((....))))))....)))).........))))........ ( -21.09)
>consensus
AAAAAGAAAAUCAGUCCCAAGAGUGAGAGUAAAAUAUUCAAAGCUUUCACCUCCUGCAAGUGCACCCAAAAGU______AGGAGUUGCAUCACGUG
......................((((((((............))))))))(((((((....)))................))))............ ( -9.59 =  -9.76 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:49 2006