Locus 7992

Sequence ID	3R_DroMel_CAF1
Location	21,421,780 – 21,421,883
Length	103
Max. P	0.996009

overview

Window 8

Location	21,421,780 – 21,421,883
Length	103
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	74.19
Mean single sequence MFE	-31.50
Consensus MFE	-15.86
Energy contribution	-15.55
Covariance contribution	-0.31
Combinations/Pair	1.26
Mean z-score	-2.93
Structure conservation index	0.50
SVM decision value	2.64
SVM RNA-class probability	0.996009
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21421780 103 + 27905053
G---AUG---GCCACAUUGGCCACCGUUCUCCACAGAAUUUGGAGGCACAACAGUUCAGUUACCAUCUGA----GUUCUAUUGAAUAGCUUGAAGAACUAGGGGA-UUGCCAUU
(---.((---(((.....))))).)..(((((.((((...(((..((...........))..)))))))(----(((((.(..(.....)..))))))).)))))-........ ( -27.50)
>DroSec_CAF1 29614 95 + 1
G---AUG---GCCACAUUGGCCACCGUUCUCCUCAGAAUUUGGAGGCU--------CAGUUACCAUCUUCUUUUCUUCUAUUGAAGAACUUCAA----UAGGAGA-UUACCAUU
(---(((---(....(((((((.(((((((....)))))..)).))).--------))))..)))))......((((((((((((....)))))----)))))))-........ ( -31.60)
>DroSim_CAF1 14384 106 + 1
GAUGAUG---GCCACAUUGGCCACCGUUCUCCUCCGAAUUUGGUAGCUCAACAGUUCAGUUACCAUCAGGAGUUCUUCUAUUGAAGAACUUCAA----UAGGAGA-UUAACAUU
.(((.((---(((.....))))).)))((((((.......((((((((.........))))))))...((((((((((....))))))))))..----.))))))-........ ( -40.00)
>DroEre_CAF1 29850 103 + 1
C---UUAUAAGCCACUUUGGCCACCGUUCUCCUCAGAAUUUGGCGGCUCAACAGUUCAGCUACCAUCUUA----GUUCGCUGGAAGAACUUCAG----CAGGGGGUUUGCUAUG
.---...((((((.(((((.(....(((((((...((((((((..(((.........)))..)))....)----))))...)).)))))....)----)))))))))))..... ( -26.90)
>consensus
G___AUG___GCCACAUUGGCCACCGUUCUCCUCAGAAUUUGGAGGCUCAACAGUUCAGUUACCAUCUGA____CUUCUAUUGAAGAACUUCAA____UAGGAGA_UUACCAUU
..........(((.....)))......(((((........(((.(((...........))).)))........(((((....))))).............)))))......... (-15.86 = -15.55 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:48 2006