Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,418,436 – 21,418,546 |
Length | 110 |
Max. P | 0.536070 |
Location | 21,418,436 – 21,418,546 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -21.17 |
Energy contribution | -22.40 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.29 |
Mean z-score | -1.55 |
Structure conservation index | 0.61 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.536070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21418436 110 - 27905053 GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAUGUACUUGGAGACACGCAAAGGUCCCUGGUACAAGCAAAAGAGUCGUAAGGUAAGU ((((.((.((((((((((((.....)))))))))))).(((((.((........((((((.((.(((.(.....)))))).)))))).))....))))))).)))).... ( -38.20) >DroVir_CAF1 14782 104 - 1 GCCUGGCAGUGACUCGCGAUGAUGUGUGGUUCACAAAAAAUCCUGCUGCAUGUGAAUAUGUUGAGACGCGUCAGGGU------UAUAAGGUGCCCGUUCGCAAGGUAAGC ((((((((((((..((((......))))..))))....(((((((.(((.(.(.((....)).).).))).))))))------)......)))).(....).)))).... ( -27.90) >DroSec_CAF1 26353 110 - 1 GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAUGUACUUGGAGACGCGCAAAGGUCCCUGGUACAAGCAAAUGAGUCGUAAGGUAAGU ((((.((.((((((((((((.....)))))))))))).((((((.....((...((((((.((.(((.(.....)))))).))))))))....)))))))).)))).... ( -38.80) >DroSim_CAF1 11151 110 - 1 GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAUGUACUUGGAGACGCGCAAAGGUCCCUGGUACAAGCAAAUGAGUCGUAAGGUAAGU ((((.((.((((((((((((.....)))))))))))).((((((.....((...((((((.((.(((.(.....)))))).))))))))....)))))))).)))).... ( -38.80) >DroEre_CAF1 26366 110 - 1 GUCUGGCUUUCGUCAAGGACGAUGUGUUCUUUACCAAGGACUCUGCGUACUAUGAGUACUUGGAGACGCGCAAAGGACCCUGGUACAAGCUGAAAAGUCGUAAGGCAAGU .((.((((((((((...))))).........(((((.((.((.(((((((.....))))..(....)..))).))..)).))))).)))))))...(((....))).... ( -31.20) >DroYak_CAF1 11606 110 - 1 GCCUGGCUUUGGUCAAGGACGAUGUGUUCUUCACCAAGGAUUCGGCUUACUAUGAGUACUUGGAGACGCGCAAAGGACCCUGGUACAGGCAGAAGAGUCGCAAGGUAAGU ((((((((..((((((((((.....))))))..(((((.(((((........))))).)))))............))))..))).))))).......((....))..... ( -33.50) >consensus GCCUGGCAUUGGUGAAGGACGAUGUGUUCUUUACCAAGGAUUCGGCAUACUAUAAGUACUUGGAGACGCGCAAAGGUCCCUGGUACAAGCAAAAGAGUCGUAAGGUAAGU ((((.((.(((((.((((((.....)))))).))))).((((((.....).....(((((.((.(((.(.....)))))).)))))........))))))).)))).... (-21.17 = -22.40 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:44 2006