Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,718,793 – 2,718,883 |
Length | 90 |
Max. P | 0.558567 |
Location | 2,718,793 – 2,718,883 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -24.02 |
Energy contribution | -23.86 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.23 |
Mean z-score | -1.52 |
Structure conservation index | 0.77 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2718793 90 - 27905053 GGGACGUAUUUGGUUAGGGGCAACCAUUUGCCGGCGAUUCGACAGAGUCGGGAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA ..........(((((..((....)).((((((((((((((....)))))((.(......).)))))))))))...........))))).. ( -30.70) >DroSec_CAF1 29071 90 - 1 GGGAUGUAUUUGGUUAGGGGCAACCAUUUGCCGACGAUCCGAGAGAGUCGGCAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA ..........(((((..((....)).(((((((((((..(....)..))((((......)))))))))))))...........))))).. ( -34.00) >DroSim_CAF1 30269 90 - 1 GGGACGUAUUUGGUUAGGGGCAACCAUUUGCCGGCGAUCCGAGAGAGUCGGCAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA ..........(((((..((....)).(((((((((((..(....)..))((((......)))))))))))))...........))))).. ( -33.40) >DroEre_CAF1 30313 89 - 1 AGGAUGUAUUUGUUUUGGGGCAACCAUUUGCCGGCGAUCCGACAGAGUCGGCGUGCACUUGCCGUCGGCGGAGCGGAAAUUA-AACCAUA .((..((.((((((((.((....))....((((((((..(....)..))((((......)))))))))))))))))).))..-..))... ( -29.80) >DroYak_CAF1 30110 90 - 1 AGAAUGUAUUGGCUUUGGAGCAAAUGGUUGCUUGCGAUCCGACAGAGUCGGCGUGCACUUGCCGUCGGCGGAGCGGAAAUGAAAACCGCC ..........(((.(((((((((....)))))).)))((((.....(((((((.((....)))))))))....))))..........))) ( -28.70) >consensus GGGAUGUAUUUGGUUAGGGGCAACCAUUUGCCGGCGAUCCGACAGAGUCGGCAUGCACUUGCCGUCGGCGGAGCGGAAAUUAAAACCAUA ....(((..........((....)).((((((((((((.(....).)))((((......))))))))))))))))............... (-24.02 = -23.86 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:26 2006