| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,411,651 – 21,411,744 |
| Length | 93 |
| Max. P | 0.920799 |
| Location | 21,411,651 – 21,411,744 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.85 |
| Mean single sequence MFE | -26.86 |
| Consensus MFE | -20.02 |
| Energy contribution | -21.63 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21411651 93 + 27905053 CUAAGUGGCCACUUGCCAACGAUGUCUGGCUUGCCUGACAUCCUCAAGUGGCGUCUUCAAUGGCGCUUUCA---------------CCCAUCUCUUGCUCCUCCACGC ....((((.((((((.....((((((.((....)).))))))..))))))(((((......))))).....---------------................)))).. ( -30.20) >DroSec_CAF1 19622 92 + 1 CUAAGUGGCCACUUGCCAGCGAUGUCUGGCUUGUCUGACAACCUCAAGUGGCGUCUUCAAUGGCGCUUUCC---------------GCCAUCUCUUGCUCCU-CACGC ....(((((((((((..((.(.((((.((....)).)))).)))))))))))((.....((((((.....)---------------))))).....))....-))).. ( -29.20) >DroSim_CAF1 4388 93 + 1 CUAAGUGGCCACUUGCCAGCGAUGUCUGGCUUGUCUGACAACCUCAAGUGGCGUCUUCCAUGGCGCUUUCC---------------CCCAUCUCUUGCCCCUCCACGC ....((((.((((((..((.(.((((.((....)).)))).)))))))))(((((......))))).....---------------................)))).. ( -24.90) >DroEre_CAF1 19380 93 + 1 CUAAGUGGCCACUUGCCAGCGAUGUCUGGCUUGUCUGACAUCCUCAAGUGGCAUCUUCAAUGGCGCUUUCC---------------CCCAUCUCUUGCUCCUCCACGA ....(((((((((((..((.((((((.((....)).)))))))))))))))).........((.((.....---------------..........)).))..))).. ( -29.46) >DroYak_CAF1 4527 108 + 1 CUAAGUGGCCACUUGCCAGCGAUGUCUGGCUUGUCUGACAUCCUCAAGUGGCGUCUUCAAUGGCGCUUUACCCCUCUCCCCCCUCCCGCAUCUCUUGCUCCACCACGA ....((((.((((((..((.((((((.((....)).))))))))))))))(((((......))))).....................(((.....)))....)))).. ( -32.00) >DroAna_CAF1 98151 80 + 1 CAAAGUGGCCACU-----GCAUCGUCUGGUUUGUCUAACAACCUCAAGUGGCGUCUUCAGUGAUUCACCCG---------------ACCAC--CCUGCUCUU------ ....((((.((((-----(...((((.((((.(.....)))))......))))....)))))..((....)---------------)))))--.........------ ( -15.40) >consensus CUAAGUGGCCACUUGCCAGCGAUGUCUGGCUUGUCUGACAACCUCAAGUGGCGUCUUCAAUGGCGCUUUCC_______________CCCAUCUCUUGCUCCUCCACGC ....(((((((((((..((.((((((.((....)).))))))))))))))))(((......))).......................................))).. (-20.02 = -21.63 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:39 2006