Locus 7986

Sequence ID 3R_DroMel_CAF1
Location 21,411,187 – 21,411,297
Length 110
Max. P 0.613362
window12858

overview

Window 8

Location 21,411,187 – 21,411,297
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 85.73
Mean single sequence MFE -25.65
Consensus MFE -18.24
Energy contribution -18.80
Covariance contribution 0.56
Combinations/Pair 1.31
Mean z-score -1.74
Structure conservation index 0.71
SVM decision value 0.16
SVM RNA-class probability 0.613362
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21411187 110 - 27905053
UUUUUCUGAUGGGGAAGUUCACUUCAAUUAUGGAUAACAGGAAUCCAGGACACCUAACAAAUCAAAGUCCAUAAGCUUUUUAAAAAGCUUUUUGGAGAGCUUUGCUAUCC
.......(((((.(((((((..........(((((.......)))))....................((((.(((((((....)))))))..))))))))))).))))). ( -30.20)
>DroSec_CAF1 19195 110 - 1
UUUUUCUGAUAGGGAAGUUAACUUCAAUUAUGAAUAACAGGAAUCCAGGACACCUAACAAAUCAAAGUCCAUAAGCUUUUUGAAAAGCUUUUGGUAGAGCUUUGCUAUCC
.......(((((.((((((...((((....))))..........(((((((...............))))..(((((((....))))))).)))...)))))).))))). ( -23.56)
>DroSim_CAF1 3981 110 - 1
UUUUUCUGAUGUGGAAGUUCACUUAAAUUAUGAAUAACAGGAAUCCAGGACACCUAACAAAUCAAAGUCCAUAAGCUUUUUGAAAAGCUUUUGGUAGAGCUUUGAUGUCC
..((((((..((((....))))(((.....)))....))))))....(((((.........((((((((((.(((((((....))))))).)))....)))))))))))) ( -24.40)
>DroEre_CAF1 18914 110 - 1
UUUUCCUGAUGGGGAAGUUAACUACUGGUAAGGAGAACAAAAAUCCAGGACACCUAACAAAUCAAAGUUGAGAUGCUUUUGAAAAAGCUUUUCGUCGAGCUUUGCUAUCC
.......(((((.((((((.....((((................))))(((....(((........)))((((.(((((....))))).))))))).)))))).))))). ( -25.59)
>DroYak_CAF1 4067 110 - 1
UUUUUCUGAUAGGGAAGCUUACUUCCAGCAAGGAUAACAAAAAUCCAGUACACCUAACCAAUCAAAGUUCAGAUGCUUUUGAAGAAGCUUUUAGUAGAGCUUUGGUAUCC
.........((((((((....))))).....((((.......)))).......)))....(((((((((((((.(((((....))))).)))....)))))))))).... ( -24.50)
>consensus
UUUUUCUGAUGGGGAAGUUAACUUCAAUUAUGGAUAACAGGAAUCCAGGACACCUAACAAAUCAAAGUCCAUAAGCUUUUUAAAAAGCUUUUGGUAGAGCUUUGCUAUCC
.......(((((.(((((((...........((((.......))))......................(((.(((((((....))))))).)))..))))))).))))). (-18.24 = -18.80 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:39 2006