| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,407,401 – 21,407,511 |
| Length | 110 |
| Max. P | 0.684975 |
| Location | 21,407,401 – 21,407,511 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.35 |
| Mean single sequence MFE | -44.70 |
| Consensus MFE | -26.50 |
| Energy contribution | -26.37 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21407401 110 - 27905053 AACCAGGUUGCUUUUGGCAUGAAUGCAGCCAUUGGAGGGCAUUUAUGCUGUUUGCCGAGAGUCUGGCAAGGGAUCAGGCAACGGGCUUCUUAUCCCAGGGCUGUCCAGCU ..((..(((((((..(((((((((((..((...))...))))))))))).(((((((......))))))).....)))))))(((........))).))(((....))). ( -40.20) >DroPse_CAF1 202 104 - 1 AGCCGGGCUGCUUCUGGCGCGAGUGCAGCCACUGGAGGGCAUUCAGCCUCUUUGCCGAGAGUCUGC-----GGCCCGGCCG-GGAAUUUCCGGCCCGUGGCUGUGCGGUC .((((((.....))))))....(..(((((((....((((...(((.(((((....))))).))).-----.))))(((((-((....))))))).)))))))..).... ( -57.00) >DroGri_CAF1 118 107 - 1 AGCCGGGCUGCUUCUGGCACGAGUGCAGCCACUGGCGUGCCUUUGCGCUCUUCAAGGAGAGCCUGGA---GGCUCGGGGUGCUGCCUUCGAGGCCAAGGGUUGUCUGCCC ...(((((.(((..((((.((((.(((((.(((..((.((((..(.((((((....)))))).)..)---))).)).)))))))).))))..))))..))).)))))... ( -53.90) >DroSec_CAF1 15360 110 - 1 AACCAGGUUGCUUUUGGCAUGAAUGCAGCCAUUGGAGGGCAUUUAUGCUGUUCGCCGAGAGUCUGGCAAGGGAUCAGGCAACGGGCUUCUUAUCCCAGGGCUGUCCAGCU ..((..(((((((..(((((((((((..((...))...)))))))))))....((((......))))........)))))))(((........))).))(((....))). ( -38.10) >DroEre_CAF1 15088 110 - 1 AACCAGGCUGCUUUUGGCAUGAAUGCAGCCAUUGGAGAGCAUUUAUGCUGUUUGCCGAGAGUCUAGCAAGGGAUCAGGAAACGGGCUUCUUAUCCCAGGGCUGUCCAGCU .....((((((.(((.....))).)))))).(((((.(((.....(((((...(.(....).)))))).(((((.(((((......))))))))))...))).))))).. ( -38.40) >DroYak_CAF1 115 110 - 1 AGCCAGGUUGCUUUUGGCAUGAAUGCAGCCAUUGGAGGGCAUUUAUGCUGUUUGCCGAGAGUCUCGCUGGGGAUCAGGAGACGGGCUUCUUAUCCCAGGGCUGUCCAGCU .((((((.....))))))((((((((..((...))...))))))))((((...((((((...))).(((((.((.(((((.....))))).))))))))))....)))). ( -40.60) >consensus AACCAGGCUGCUUUUGGCAUGAAUGCAGCCAUUGGAGGGCAUUUAUGCUGUUUGCCGAGAGUCUGGCAAGGGAUCAGGCAACGGGCUUCUUAUCCCAGGGCUGUCCAGCU .....(((((.....(((((((((((..((...))...))))))))))).......((.(((((.....(((((.(((.........))).))))).))))).))))))) (-26.50 = -26.37 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:38 2006