Locus 7984

Sequence ID 3R_DroMel_CAF1
Location 21,406,984 – 21,407,080
Length 96
Max. P 0.752965
window12856

overview

Window 6

Location 21,406,984 – 21,407,080
Length 96
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 76.67
Mean single sequence MFE -23.43
Consensus MFE -15.49
Energy contribution -16.48
Covariance contribution 0.99
Combinations/Pair 1.25
Mean z-score -1.36
Structure conservation index 0.66
SVM decision value 0.48
SVM RNA-class probability 0.752965
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21406984 96 - 27905053
---UGUGCUGUCCCAUUUCUAAAAGCC-GGCUGGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAUGCUUUUCAUGCCAGUCGCAGGCAGU---------------A-AAAAUAGCA
---..((((((.............(((-....)))............(((((((.((((......((.......))....))))))))))---------------)-...)))))) ( -25.10)
>DroPse_CAF1 125863 115 - 1
AUGUACGCUGUUCCAUUUCUAAAAGCCUGGCUGGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAUGCUUUUCAUGCCAGUCACAGGCAACAGGAAGGACCCCGUCA-AAAACAGCA
......((((((...(((((....((((((((((((...........(((........)))............)))))))..)))))....)))))(((...))).-..)))))). ( -29.90)
>DroGri_CAF1 113322 76 - 1
------------GCAUUUCUAAAAGCU-GCGCUGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAAGCUUUUCAUGCCAGUCACAGGCGG---------------------------
------------........(((((((-((((.(((..(((....)))..)))...))))....)))))))..((((.......)))).--------------------------- ( -15.00)
>DroSim_CAF1 98199 97 - 1
---UGUGCUGUCCCAUUUCUAAAAGCC-GGCUGGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAUGCUUUUCAUGCCCCUUCCCCGCAGG---------------AUAAAAUACCA
---(((..(((((.......((((((.-.(((((((..(((....)))..)))))...)).....))))))..(((.........)))))---------------)))..)))... ( -15.60)
>DroYak_CAF1 101518 96 - 1
---UGUGCUGUCCCAUUUCUAAAAGCC-GGCUGGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAUGCUUUUCAUGCCAGUCGCAGGCAGU---------------A-AAAAUAGCA
---..((((((.............(((-....)))............(((((((.((((......((.......))....))))))))))---------------)-...)))))) ( -25.10)
>DroPer_CAF1 148808 115 - 1
AUGUACGCUGUUCCAUUUCUAAAAGCCUGGCUGGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAUGCUUUUCAUGCCAGUCACAGGCAACAGGAAGGACCCCGUCA-AAAACAGCA
......((((((...(((((....((((((((((((...........(((........)))............)))))))..)))))....)))))(((...))).-..)))))). ( -29.90)
>consensus
___UGUGCUGUCCCAUUUCUAAAAGCC_GGCUGGCAAAAUUAAAAAAUGCUGCCAUGUGUAAAAUGCUUUUCAUGCCAGUCACAGGCAGC_______________A_AAAAUAGCA
......(((((.............(((.....))).............((((((.((((......((.......))....))))))))))....................))))). (-15.49 = -16.48 +   0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:36 2006