| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,406,338 – 21,406,433 |
| Length | 95 |
| Max. P | 0.527437 |
| Location | 21,406,338 – 21,406,433 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 64.05 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -7.88 |
| Energy contribution | -7.36 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.35 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21406338 95 - 27905053 G--CAGUCCAUUGGCCAAAGGGCACAAAAAC---------------GUAGAAAACUUGGCAGCUGGCGAUGGAUGCCAUAGAAAAUUACGAGAACAAAUAUUGGCAAAAGCA (--(.((((((((.(((....((.(((....---------------.........)))))...)))))))))))((((.......................))))....)). ( -22.42) >DroPse_CAF1 124827 106 - 1 AAAAAGAAAAUUGGCCCACAGGCACACCAACAACAGUGGAAAAACAGGCAAAAACUUGGC--CUGGCA----AUGCCUUAGGAAAUUACGUGAGCAAAUAUUGGCCCAGGAA ..........((((.((((((((.(((........)))......((((......))))))--)))...----.(((.(((.(......).)))))).....))).))))... ( -24.20) >DroGri_CAF1 112101 77 - 1 CAGCAGCCAAUUGGACAGCAGUCCCAAA--------------------UGGGAACGUG---------------AGCAAUGAGAAAUGACUUGCUCAAAUAUUUGCCAAAACA ..(((((((.((((((....)).)))).--------------------))).....((---------------((((((.(....).).))))))).....))))....... ( -19.60) >DroSim_CAF1 97123 95 - 1 G--CAGUCCAUUGGCCAAAGGGCACGAAAAC---------------GUAGAAAACUUGGCAGCUGCCGAUGGAUGCCAUAGAAAAUUACGAGAACAAAUAUUGGCAAAAGCA (--(.((((((((((...((.((.(((....---------------.........)))))..))))))))))))((((.......................))))....)). ( -23.72) >DroYak_CAF1 100850 95 - 1 G--CAGGCCAUUGGCCAAAGGGCACAGGAAC---------------GUUGAAAACUUGGCAGCUGCGGAUGGAUGCCAUAGGAAAUUACGAGUAUAAAUAUUGGCAAAAGCA (--(..((((((((((....))).)))...(---------------((......(((((((.((......)).))))).))......)))...........))))....)). ( -24.00) >consensus G__CAGUCCAUUGGCCAAAGGGCACAAAAAC_______________GUAGAAAACUUGGCAGCUGCCGAUGGAUGCCAUAGGAAAUUACGAGAACAAAUAUUGGCAAAAGCA ..........((((((....))).)))...............................................((((.......................))))....... ( -7.88 = -7.36 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:35 2006