Locus 7978

Sequence ID 3R_DroMel_CAF1
Location 21,384,055 – 21,384,175
Length 120
Max. P 0.630640
window12843

overview

Window 3

Location 21,384,055 – 21,384,175
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -21.00
Consensus MFE -16.50
Energy contribution -16.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.79
SVM decision value 0.20
SVM RNA-class probability 0.630640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21384055 120 + 27905053
GCUUUUCAAUUUGAAAACAAAUCUAAACUUUGUAAUAAAGAAAUUUAAUAAGCAAAGUUGGCUGCAUCUAACAACUUGCAAUACAUUUUGUUUAUAGAAACACGCAUAUCCACAUUUGCA
.........((((.(((((((....((((((((..((((....))))....))))))))...((((..........))))......))))))).)))).....(((..........))). ( -18.40)
>DroSec_CAF1 78335 120 + 1
GCUUUUCAAUUUGAAAACAAAUCUAAACUUUGUAAUAAAGAAAUUUAAUAAGCAAAGUUGGCUGCAUCUAACAACUUGCAAUAUAUUUUGUUUAUAGAAACACGCAUAUCCACAUUUGCA
.........((((.(((((((....((((((((..((((....))))....))))))))...((((..........))))......))))))).)))).....(((..........))). ( -18.40)
>DroSim_CAF1 74857 120 + 1
GCUUUUCAAUUUGAAAACAAAUCUAAACUUUGUAAUAAAGAAAUUUAAUAAGCAAAGUUGGCUGCAUCUAACAACUUGCAAUAUAUUUUGUUUAUAGAAACACGCAUAUCCACAUUUGCA
.........((((.(((((((....((((((((..((((....))))....))))))))...((((..........))))......))))))).)))).....(((..........))). ( -18.40)
>DroEre_CAF1 78123 120 + 1
GCAUUUCAAUUUGAAAACAAAUCUAAACUUUGUAAUAACGAAAUUUAAUAAGCAAAGUUGCUUGCAUCUAACAAGUUGCAAUACAUUUUGUUUAUAGAAACACGCAUAUCCACAUUUGCA
...((((.(((((....))))).((((.(((((....))))).))))(((((((((((...(((((.((....)).)))))...))))))))))).))))...(((..........))). ( -20.30)
>DroYak_CAF1 77892 120 + 1
GCUUUUCAAUUUGGAAACAAAUCUAAAGUUUGUAAUAAAGAAAUUUAAUAAGCAAAGUUGGUUGCAUCUAACAACUUGCAAUACAUUUUGUUUAUAGAAACACGCAUAUCCACAUAUGCA
(((((...(((((....)))))..))))).(((..((((....))))(((((((((((..((((((..........))))))..)))))))))))....))).((((((....)))))). ( -29.50)
>consensus
GCUUUUCAAUUUGAAAACAAAUCUAAACUUUGUAAUAAAGAAAUUUAAUAAGCAAAGUUGGCUGCAUCUAACAACUUGCAAUACAUUUUGUUUAUAGAAACACGCAUAUCCACAUUUGCA
...((((.(((((....))))).........................(((((((((((....((((..........))))....))))))))))).))))...(((..........))). (-16.50 = -16.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:25 2006