Locus 7977

Sequence ID 3R_DroMel_CAF1
Location 21,381,453 – 21,381,547
Length 94
Max. P 0.973876
window12842

overview

Window 2

Location 21,381,453 – 21,381,547
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 97.46
Mean single sequence MFE -31.10
Consensus MFE -29.68
Energy contribution -29.40
Covariance contribution -0.28
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.95
SVM decision value 1.72
SVM RNA-class probability 0.973876
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21381453 94 - 27905053
CCGAGGAGCAGGAACUGGUAACAGGUAACUGGUAAGGUAACCUGGUGCUCCACACCCGUACAAUCGCAUACACAUGCCUUUGUGCGCCUCC-CCG
.((.(((((.((...(((...(((((.(((.....))).))))).....)))...))((((((..((((....))))..))))))).))))-.)) ( -32.00)
>DroSec_CAF1 75796 94 - 1
CCGAGGAGCAGGAACUGGUAACAGGUAACUGGUAAGGUAACCUGGUGCUCCACACCCGUACAAUCGCAUACACAUGCCUUUGUGCGCCUCC-CCG
.((.(((((.((...(((...(((((.(((.....))).))))).....)))...))((((((..((((....))))..))))))).))))-.)) ( -32.00)
>DroSim_CAF1 72326 94 - 1
CCGAGGAGCAGGAACUGGUAACAGGUAACUGGUAAGGUAACCUGGUGCUCCACACCCGUACAAUCGCAUACACAUGCCUUUGUGCGCCUCC-CCG
.((.(((((.((...(((...(((((.(((.....))).))))).....)))...))((((((..((((....))))..))))))).))))-.)) ( -32.00)
>DroEre_CAF1 75518 94 - 1
CCGAGGAGCAGGAACUGGUAACAGGUAACUGGUAAGGUAACCUGGUGCUCCACACCCGUACAAUCGCAUACACAUGCCUUUGAACGCUUCG-CCG
.((.(((((.((...(((...(((((.(((.....))).))))).....)))...))((.(((..((((....))))..))).))))))).-.)) ( -28.00)
>DroYak_CAF1 75205 95 - 1
CCGAGGAGCAGGAACUGGUAACAGGUAACUGGUAAGGUAACCUGGUGCUCCACACCCGUACAAUCGCAUACACAUGCCUUUGUACGCUUCCCCCG
....(((((.((...(((...(((((.(((.....))).))))).....)))...))((((((..((((....))))..)))))))))))..... ( -31.50)
>consensus
CCGAGGAGCAGGAACUGGUAACAGGUAACUGGUAAGGUAACCUGGUGCUCCACACCCGUACAAUCGCAUACACAUGCCUUUGUGCGCCUCC_CCG
..((((....(((....(((.(((((.(((.....))).))))).)))))).....(((((((..((((....))))..)))))))))))..... (-29.68 = -29.40 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:24 2006