Locus 7974

Sequence ID 3R_DroMel_CAF1
Location 21,378,207 – 21,378,309
Length 102
Max. P 0.783105
window12838

overview

Window 8

Location 21,378,207 – 21,378,309
Length 102
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 93.21
Mean single sequence MFE -25.11
Consensus MFE -20.04
Energy contribution -21.24
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.783105
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21378207 102 - 27905053
CAAUUGUUUGGCCAAAGCGGGCGGAGUGAA-AAGAAAC-CGAAGAAAGGCAAAGGAGCCGUUGCAGGAGCAACAAACUCGGCUAAAAUCAGACAUCAUUAUGUU
....((((((((....)).(((.((((...-.......-........(((......)))(((((....)))))..)))).))).....)))))).......... ( -27.20)
>DroSec_CAF1 72681 102 - 1
CAAUUGUUUGGCCAAAGCGGGCGGAGUGAA-AAGAAAC-CGAAGAAAGGCAAAGGAGCCGUUGCAGGAGCAACAAACUCGGCUAAAAUCAGACAUCAUUAUGUU
....((((((((....)).(((.((((...-.......-........(((......)))(((((....)))))..)))).))).....)))))).......... ( -27.20)
>DroSim_CAF1 69115 103 - 1
CAAUUGUUUGGCCAAAGCGGGCGGAGUAAAAAAGAAAC-CGAAGAAAGGCAAAGGAGCCGUUGCAGGAGCAACAAACUCGGCUAAAAUCAGACAUCAUUAUGUU
....((((((((....)).(((.((((...........-........(((......)))(((((....)))))..)))).))).....)))))).......... ( -27.20)
>DroEre_CAF1 72243 103 - 1
CAAUUGUUUGGCCAAAGCGGACGAAGUGGA-AAAAAAACCGAGGAAAGGCAAAGGAGCCAUUGCAGGAGCAACAAACUCGGCUAAAAUCAGACAUCAUUAUGUU
....((((((((((...(....)...))).-.......(((((....(((......))).((((....))))....)))))......))))))).......... ( -24.00)
>DroYak_CAF1 71850 103 - 1
CAAUUGUUUGGCCAAAGCGGGCGAAGUGGA-AAGAAACCGUAGAAAUGGAAAAGGAGCCAUUGCAGGAGCAACAAACUCGGCUAAAAUCAGACAUCAUUAUGUU
......(((((((.......(((..((((.-......((((....))))........)))))))..(((.......))))))))))....(((((....))))) ( -19.96)
>consensus
CAAUUGUUUGGCCAAAGCGGGCGGAGUGAA_AAGAAAC_CGAAGAAAGGCAAAGGAGCCGUUGCAGGAGCAACAAACUCGGCUAAAAUCAGACAUCAUUAUGUU
....((((((((....)).(((.((((....................(((......)))(((((....)))))..)))).))).....)))))).......... (-20.04 = -21.24 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:20 2006