Locus 7973

Sequence ID	3R_DroMel_CAF1
Location	21,376,338 – 21,376,433
Length	95
Max. P	0.999497

overview

Window 6

Location	21,376,338 – 21,376,433
Length	95
Sequences	5
Columns	95
Reading direction	forward
Mean pairwise identity	98.32
Mean single sequence MFE	-21.98
Consensus MFE	-21.46
Energy contribution	-21.46
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.70
Structure conservation index	0.98
SVM decision value	1.95
SVM RNA-class probability	0.983709
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21376338 95 + 27905053
GUAAUGAAGGCAAAUCGAAUAAAAACUAUAUUUUUCUUCGCCUGCCCUGUGGCCGAUGAUUUGCCUAACAAUGGCAUUAAUCACGCUUAUUAGUU
.((((((((((((((((((.(((((.....))))).)))(((........)))....))))))))).......((.........))))))))... ( -21.30)
>DroSec_CAF1 70834 95 + 1
GUAAUGAAGGCAAAUCGAAUAAAAACUAUAUUUUUCUUCGCCUGCCCUGUGGCCGAUGAUUUGCCUAACAAUGGCAUUAAUCACGCUUAUUAGUU
.((((((((((((((((((.(((((.....))))).)))(((........)))....))))))))).......((.........))))))))... ( -21.30)
>DroSim_CAF1 67212 95 + 1
GUAAUGAAGGCAAAUCGAAUAAAAACUAUAUUUUUCUUCGCCUGCCCUGUGGCCGAUGAUUUGCCUAACAAUGGCAUUAAUCACGCUUAUUAGUU
.((((((((((((((((((.(((((.....))))).)))(((........)))....))))))))).......((.........))))))))... ( -21.30)
>DroEre_CAF1 70391 95 + 1
GUAAUGAAGGCAAAUCGAAUAAAAACUAUAUUUUUCUUCGCCUGCCCUGUGGCUAAUGAUUUGCCUAACAAUGGCAUUAAGCACGCUUAUUAGUU
.((((((((((((((((((.(((((.....))))).)))(((........)))....))))))))).......((.....))....))))))... ( -23.00)
>DroYak_CAF1 69996 95 + 1
GUAAUGAAGGCAAAUCGAAUAAAAACUAUAUUUUUCUUCGCCUGCCCUGUGGCUGAUGAUUUGCCUAACAAUGGCAUUAAGCACGCUUAUUAGUU
.((((((((((((((((((.(((((.....))))).)))(((........)))....))))))))).......((.....))....))))))... ( -23.00)
>consensus
GUAAUGAAGGCAAAUCGAAUAAAAACUAUAUUUUUCUUCGCCUGCCCUGUGGCCGAUGAUUUGCCUAACAAUGGCAUUAAUCACGCUUAUUAGUU
.((((((((((((((((((.(((((.....))))).)))(((........)))....))))))))).......((.........))))))))... (-21.46 = -21.46 +   0.00)

alignment

secondary structure

dotplot

Window 7

Location	21,376,338 – 21,376,433
Length	95
Sequences	5
Columns	95
Reading direction	reverse
Mean pairwise identity	98.32
Mean single sequence MFE	-24.28
Consensus MFE	-24.28
Energy contribution	-24.28
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-2.29
Structure conservation index	1.00
SVM decision value	3.66
SVM RNA-class probability	0.999497
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21376338 95 - 27905053
AACUAAUAAGCGUGAUUAAUGCCAUUGUUAGGCAAAUCAUCGGCCACAGGGCAGGCGAAGAAAAAUAUAGUUUUUAUUCGAUUUGCCUUCAUUAC
...((((((((((.....))))..))))))((((((((....(((........)))(((.((((((...)))))).)))))))))))........ ( -24.20)
>DroSec_CAF1 70834 95 - 1
AACUAAUAAGCGUGAUUAAUGCCAUUGUUAGGCAAAUCAUCGGCCACAGGGCAGGCGAAGAAAAAUAUAGUUUUUAUUCGAUUUGCCUUCAUUAC
...((((((((((.....))))..))))))((((((((....(((........)))(((.((((((...)))))).)))))))))))........ ( -24.20)
>DroSim_CAF1 67212 95 - 1
AACUAAUAAGCGUGAUUAAUGCCAUUGUUAGGCAAAUCAUCGGCCACAGGGCAGGCGAAGAAAAAUAUAGUUUUUAUUCGAUUUGCCUUCAUUAC
...((((((((((.....))))..))))))((((((((....(((........)))(((.((((((...)))))).)))))))))))........ ( -24.20)
>DroEre_CAF1 70391 95 - 1
AACUAAUAAGCGUGCUUAAUGCCAUUGUUAGGCAAAUCAUUAGCCACAGGGCAGGCGAAGAAAAAUAUAGUUUUUAUUCGAUUUGCCUUCAUUAC
...((((((((((.....))))..))))))((((((((....(((........)))(((.((((((...)))))).)))))))))))........ ( -24.40)
>DroYak_CAF1 69996 95 - 1
AACUAAUAAGCGUGCUUAAUGCCAUUGUUAGGCAAAUCAUCAGCCACAGGGCAGGCGAAGAAAAAUAUAGUUUUUAUUCGAUUUGCCUUCAUUAC
...((((((((((.....))))..))))))((((((((....(((........)))(((.((((((...)))))).)))))))))))........ ( -24.40)
>consensus
AACUAAUAAGCGUGAUUAAUGCCAUUGUUAGGCAAAUCAUCGGCCACAGGGCAGGCGAAGAAAAAUAUAGUUUUUAUUCGAUUUGCCUUCAUUAC
...((((((((((.....))))..))))))((((((((....(((........)))(((.((((((...)))))).)))))))))))........ (-24.28 = -24.28 +  -0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:19 2006