| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,370,666 – 21,370,768 |
| Length | 102 |
| Max. P | 0.566950 |
| Location | 21,370,666 – 21,370,768 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 81.08 |
| Mean single sequence MFE | -20.24 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.08 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21370666 102 - 27905053 UAUCUGGUCUUAUCCACACAA-CACGUUGCUAAACGUU-UCGCCU-GAAUCAUA--AAAACUUUAGUGAGCAGGUA---------UAUAAAUAAUGCAUAAACGAGACUAGACUCA ..(((((((((..........-.(((((....))))).-..((((-(..((((.--.........)))).))))).---------..................))))))))).... ( -23.10) >DroPse_CAF1 77629 107 - 1 UAUCUAGUGUUACCCAC--AA-CAAGUUGAUAAACUUU------GGGAGCUAUAAAAAAACUUUACUGAUCAGGUAUUAAUGGUGUAUAAAUAAUGCAUAAACGAGACUAGACUUA ..(((((((((.((((.--..-.(((((....))))))------))))))..........(((((((.....))))......((((((.....))))))....))))))))).... ( -20.30) >DroSec_CAF1 65247 100 - 1 UAUCUGGUCUUUUCCAC--GA-AAAGUUGAUAAACUUU-UUGCCU-GCGCCAUA--AAAACUUUAGUGAGCAGGUA---------UAUAAAUAAUGCAUAAACGAGACUAGACUCA ..(((((((((......--((-((((((....))))))-))((((-((..(((.--.........))).)))))).---------..................))))))))).... ( -27.40) >DroEre_CAF1 62931 101 - 1 UAUCUGGUCUUACCCAC--AACAAAGUUAGUAAACUUU-UCGCCU-CUGCCAUA--AAAACUUAAGUGAUCAGGUA---------UAUAAAUAAUGCAUAAACGAGACUAGACACA ..(((((((((...(((--...((((((....))))))-..((..-..))....--.........))).....(((---------(.......))))......))))))))).... ( -17.20) >DroYak_CAF1 64039 100 - 1 UAUCAGGUCUUACCCAU--AA-AAAGUUGAUAAACUUU-UCGCCA-GCGCCAUA--AAAACUUUAGUGAUCAGGUA---------UAUAAAUAAUGCAUAAACGAGACUAGACACA ..((.((((((......--.(-((((((....))))))-).(((.-.(((....--.........)))....))).---------..................)))))).)).... ( -13.72) >DroPer_CAF1 100720 113 - 1 UAUCUAGUGUUACCCAC--AA-CAAGUUGAUAAACUUUUUCGCAUGGAGCCAUAAAAAAACCUUACUGAUCAGGUAUUAAUGGUGUAUAAAUAAUGCAUAAACGAGACUAGACUUA ..((((((.((......--..-.(((((....)))))....((((...(((((.((...((((........)))).)).))))).........))))......)).)))))).... ( -19.70) >consensus UAUCUGGUCUUACCCAC__AA_AAAGUUGAUAAACUUU_UCGCCU_GAGCCAUA__AAAACUUUAGUGAUCAGGUA_________UAUAAAUAAUGCAUAAACGAGACUAGACUCA ..(((((((((............(((((....)))))......................((((........))))............................))))))))).... (-12.22 = -12.08 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:14 2006