Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,716,568 – 2,716,683 |
Length | 115 |
Max. P | 0.901418 |
Location | 2,716,568 – 2,716,683 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -19.01 |
Energy contribution | -19.37 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.11 |
Structure conservation index | 0.95 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2716568 115 + 27905053 AAGAGGGCAAGGAAAAACACAGAAAGCGAAA-----CGAAAACUAAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ..........................(((((-----((((..........((((.((((((((((((..............)))))))))...))).)))).)))))))))......... ( -17.64) >DroSec_CAF1 26811 115 + 1 AAGAGGGCAAGGAAAAACACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ...((((((((........(((....((...-----))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... ( -19.54) >DroSim_CAF1 27996 115 + 1 AAGAGGGCAAGGAAAAACACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ...((((((((........(((....((...-----))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... ( -19.54) >DroEre_CAF1 27794 115 + 1 AAGAGGGCAAGGAAAAGGACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ...((((((((........(((....((...-----))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... ( -19.54) >DroYak_CAF1 27589 120 + 1 AACAGGGCAAGGAAAAAGACAGAAAGCGAAACGAAACGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ..(((((((((........(((....((........))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))))......... ( -23.84) >DroAna_CAF1 27010 115 + 1 AAGUCGGCAAAGAAACACACAGAAAGCGAAA-----CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ((((((((((...............(((...-----((............))..))).(((((((((..............))))))))).....))))))))))............... ( -19.64) >consensus AAGAGGGCAAGGAAAAACACAGAAAGCGAAA_____CGAAAACUGAAAUACGGCUGCAUCAUUAAAUUUAAUAUGAUACUCAUUUAAUGAAAUUGUUGCCGAUUUGUUUUGAAAAUACAC ...((((((((........(((....((........))....))).....((((.((((((((((((..............)))))))))...))).)))).)))))))).......... (-19.01 = -19.37 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:21 2006