Locus 7969

Sequence ID 3R_DroMel_CAF1
Location 21,366,663 – 21,366,768
Length 105
Max. P 0.628779
window12830

overview

Window 0

Location 21,366,663 – 21,366,768
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 92.52
Mean single sequence MFE -22.15
Consensus MFE -15.97
Energy contribution -16.17
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.628779
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21366663 105 - 27905053
GGCAGCCAUUUCCAGAUAUAAAUGUUUCUCUUUUCCAAAUGGCAAAUGGUGAAUGCAAAUUGCGUACAUUUUGUAAAAUUUAUGCCAACAUUUGUAUUUAUUUUU
....((((((((((.........(.....).........))).)))))))((((((((((.(((((.((((....)))).)))))....))))))))))...... ( -20.77)
>DroSec_CAF1 59415 105 - 1
GGCAGCCAUUUCCAGAUAUAAAUGUUUCUCUUUUCCAAAUGGCAAAUGGCGAAUGCAAAUUGCGUACAUUUUGUAAAAUUUAUGCCAACAUUUGUAUUUAUUUUU
....((((((((((.........(.....).........))).)))))))((((((((((.(((((.((((....)))).)))))....))))))))))...... ( -23.17)
>DroSim_CAF1 56500 104 - 1
GGCAGCCAUUUCCAGAUAUAAAUGUUUCUCUUUUCCAAAUGGCAAAUGGCGAAUGCAAAUUGCGUACAUU-UGUAAAAUUUAUGCCAACAUUUGUAUUUAUUUUU
....((((((((((.........(.....).........))).)))))))((((((((((.(((((.(((-.....))).)))))....))))))))))...... ( -22.27)
>DroEre_CAF1 58959 98 - 1
GGCAGCCAUUUCCAGAUAUAAAUGUUCCGCUUCUGCAAAUGGCAA-------AUGCAAAUGGCGUACAUUUUGUAAAAUUUAUGCCAACAUUUGUAUUUAUUUUU
....(((((((.((((...............)))).)))))))((-------((((((((((((((.((((....)))).)))))))...)))))))))...... ( -28.66)
>DroYak_CAF1 59340 98 - 1
GGCACCCAUUUCCACAUAUAAAUGUUUCUCUUUUGCAAAUGGCAA-------AUGCAAAUUGCGUACAUUUUGUAAAAUUUAUGCCAACAUUUGUAUUUAUUUUU
...............(((((((((((.....(((((.....))))-------)((((((.((....)).))))))...........)))))))))))........ ( -15.90)
>consensus
GGCAGCCAUUUCCAGAUAUAAAUGUUUCUCUUUUCCAAAUGGCAAAUGG_GAAUGCAAAUUGCGUACAUUUUGUAAAAUUUAUGCCAACAUUUGUAUUUAUUUUU
.............((((((((((((..............(((((.........(((.....)))(((.....))).......)))))))))))))))))...... (-15.97 = -16.17 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:13 2006