Locus 7968

Sequence ID 3R_DroMel_CAF1
Location 21,366,412 – 21,366,507
Length 95
Max. P 0.785434
window12829

overview

Window 9

Location 21,366,412 – 21,366,507
Length 95
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 88.99
Mean single sequence MFE -20.20
Consensus MFE -17.26
Energy contribution -17.54
Covariance contribution 0.28
Combinations/Pair 1.13
Mean z-score -1.52
Structure conservation index 0.85
SVM decision value 0.57
SVM RNA-class probability 0.785434
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21366412 95 - 27905053
UAAUUAUAAGCCUGUCAGGAUGCAUAAGAAAUCCUGCUGGAA-AA--AUAACAGAAUAAAAACAAACACGAAGG-AAGAUUGGCAGCCAGCUGAAGCCU
..........((.(.((((((.........))))))).))..-..--........................(((-....(..((.....))..)..))) ( -15.20)
>DroSec_CAF1 59164 95 - 1
UAAUUAUAAGCCUGCCAGGAUGCAUAAGAAAUCCUGCUGGAA-AA--AUAACAGAAACAAAACGAACGCGGAGG-AAGAUUGGCAGGCAGCUGAAGUCU
.........((((((((((((.........))))).(((...-..--....)))....................-......)))))))........... ( -22.50)
>DroSim_CAF1 56249 95 - 1
UAAUUAUAAGCCUUCCAGGAUGCAUGAGAAAUCCUGCUGGAA-AA--AUAGCAGAAACAAAACGAACGCGAAGG-AAGAUUGGCAGGCAGCUGAAGUCU
.........((((.((((..(((..((....))((((((...-..--.)))))).............)))....-....)))).))))........... ( -20.30)
>DroEre_CAF1 58704 98 - 1
UAAUUAUAAGCCUGCCAGGAUGCAUAAGAAAUCCUGCUGGCAAAAAAAGAACAGAAACAAA-AAAACGCGAAGGAAAGAUUGGCAGACAGCUGAAGUCU
.........(((.((.(((((.........))))))).)))....................-..............(((((..(((....))).))))) ( -18.80)
>DroYak_CAF1 59086 97 - 1
UAAUUAUAAGCCUGCCAGGAUGCAUAAGAAAUCCUGCUGGAA-AAAGAAAACGGAAGCAAGGCAAACGCGAAGU-AAGAUUGGCAGGCAGCUGAAGUCU
.........(((((((((..(((........(((....))).-........(....)....((....))...))-)...)))))))))........... ( -24.20)
>consensus
UAAUUAUAAGCCUGCCAGGAUGCAUAAGAAAUCCUGCUGGAA_AA__AUAACAGAAACAAAACAAACGCGAAGG_AAGAUUGGCAGGCAGCUGAAGUCU
.........((((((((((((.........))))).(((............)))...........................)))))))........... (-17.26 = -17.54 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:12 2006