| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,359,477 – 21,359,569 |
| Length | 92 |
| Max. P | 0.917445 |
| Location | 21,359,477 – 21,359,569 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -14.61 |
| Consensus MFE | -14.37 |
| Energy contribution | -14.00 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21359477 92 + 27905053 CACUCAUAAGCCAUUUUAGAAAAGCAAUGCCACAAAGUGUUGGCAUAAAAAAUAAUGUCAACCUUCGGUAAAAAA-CAAUUUUCUGCUAAAAG ................(((((((....((((...(((.((((((((........))))))))))).)))).....-...)))))))....... ( -16.60) >DroSec_CAF1 52338 91 + 1 CACUUAUAAGCCAUUUUAGAAAAGCAAUGCCACACAGUGUUGAUAUAAA-AACAAUGUCAACCUUCGGUAAAAAA-CAAUUUUCUGCCAAAAG ................(((((((....((((....((.((((((((...-....))))))))))..)))).....-...)))))))....... ( -13.80) >DroEre_CAF1 51742 92 + 1 CACUUAUAAGCCAUUUAGGAAAAGCAAUGCCACAAAGUGUUGAUAUAAA-AACAAUGUCAACCUUCGGUAAAAAAACAAUUUUCUGCCAAAAG .................((((((....((((...(((.((((((((...-....))))))))))).)))).........))))))........ ( -13.72) >DroYak_CAF1 52001 92 + 1 CACAUAUAAGCCAUUUUGGAAAAGCAAUGCCACAAAGUGUUGAUAUAAA-AACAAUGUCAACCUUCGGUAAAAAACAAAUUUUCUGCUAAAAG ........(((......((((((....((((...(((.((((((((...-....))))))))))).)))).........)))))))))..... ( -14.32) >consensus CACUUAUAAGCCAUUUUAGAAAAGCAAUGCCACAAAGUGUUGAUAUAAA_AACAAUGUCAACCUUCGGUAAAAAA_CAAUUUUCUGCCAAAAG .................((((((....((((...(((.((((((((........))))))))))).)))).........))))))........ (-14.37 = -14.00 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:07 2006