Locus 7964

Sequence ID 3R_DroMel_CAF1
Location 21,358,886 – 21,358,991
Length 105
Max. P 0.973824
window12823

overview

Window 3

Location 21,358,886 – 21,358,991
Length 105
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 87.54
Mean single sequence MFE -23.90
Consensus MFE -20.66
Energy contribution -21.66
Covariance contribution 1.00
Combinations/Pair 1.10
Mean z-score -2.03
Structure conservation index 0.86
SVM decision value 1.72
SVM RNA-class probability 0.973824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21358886 105 - 27905053
AACG-CAAACGGCGGCCAUAACAAUAAUAACAAUAAUAAACCGCCAACAGUUUCGGCCAGCUUC-CAUUUAUAUAACUCUGCGAGCAGAGUCCAAUUGGUCGCCGUU
....-..(((((((((((........................(((.........))).......-..........((((((....)))))).....))))))))))) ( -30.00)
>DroSec_CAF1 51753 106 - 1
AACGCCAAACGGCGGCCAUAACAAUAAUAACAAUAAUAAACCGCCAACAGUUUCGGCCAGCUUC-CAUUUAUAUAACUCUGCGCGCAGAUUCCAAUUGGUCGUCGUU
.......(((((((((((........................(((.........))).......-............((((....)))).......))))))))))) ( -23.30)
>DroSim_CAF1 48936 97 - 1
NNNNNNAAACGGCGGCCAUAACAA---------UAAUAAACCGCUAACAGUUUCGGCCAGCUUC-CAUUUAUAUAACUCUGCGCGCAGAUUCCAAUUGGUCGUCGUU
.......(((((((((((......---------.........(((..(......)...)))...-............((((....)))).......))))))))))) ( -21.60)
>DroEre_CAF1 51138 101 - 1
AACG-CAAACGGCGGCAAUAACAA---UAACAAUAAUAAACCGCCGACAUUUUCGGCCAGCUUC-CAUUUAUAUAACUCUGCGAACCCAGU-CAAUUGGUCGCCGUU
....-..(((((((((........---...............(((((.....))))).......-.............(((......))).-......))))))))) ( -22.90)
>DroYak_CAF1 51361 102 - 1
AACG-CAAACGGCGGCAAUAACAA---UAACAAUAAUAAACCGCCAACAUUUUCGGCCAGCUUCCCAUUUAUAUAACUCUGCGAGCCGAGU-CAAUUGGUCGUCGUU
....-..((((((((......)..---...............(((((....((((((..((...................))..)))))).-...)))))))))))) ( -21.71)
>consensus
AACG_CAAACGGCGGCCAUAACAA___UAACAAUAAUAAACCGCCAACAGUUUCGGCCAGCUUC_CAUUUAUAUAACUCUGCGAGCAGAGUCCAAUUGGUCGUCGUU
.......(((((((((((........................(((.........)))..................((((((....)))))).....))))))))))) (-20.66 = -21.66 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:06 2006