| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,356,712 – 21,356,824 |
| Length | 112 |
| Max. P | 0.600039 |
| Location | 21,356,712 – 21,356,824 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.14 |
| Mean single sequence MFE | -8.20 |
| Consensus MFE | -7.02 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21356712 112 - 27905053 CUGACCA-ACUUCAAAAGCGAACAUUUCGUUGAAACACAAUUUUCUGCCGCUUCAAUUUGAGAAGCCC---CCUCACCACUCACAAA-CAAAAAAAAAAAUAAAACACAAAAAAAUC .(((...-..((((...((((.....))))))))...............(((((.......)))))..---..)))...........-............................. ( -9.20) >DroEre_CAF1 48998 94 - 1 CUGACCAAACUUCAAAAGCGAAAAUUUCGUUGAAACACAAUUUUCUCCCGCUUCAAUUUGAAAAGCGC---CC------CUAAAAAAACAAAAAA--------------AAAAAAAC .................(((((((((..((....))..)))))))....(((((.....))..)))))---..------................--------------........ ( -7.20) >DroYak_CAF1 49255 95 - 1 CUGACCA-ACUUCAAAAGCGAAAAUUUCGUUGAAACACAAUUUUCUCCCGCUUCAAUUUGAAAAGCGCUCCCC------CUACCAAA-AAAAAAA--------------AAAAAAAC .......-........((((((((((..((....))..)))))))....(((((.....))..))))))....------........-.......--------------........ ( -8.20) >consensus CUGACCA_ACUUCAAAAGCGAAAAUUUCGUUGAAACACAAUUUUCUCCCGCUUCAAUUUGAAAAGCGC___CC______CUAACAAA_CAAAAAA______________AAAAAAAC ..........(((((((((((.....)))))((((......))))...........))))))....................................................... ( -7.02 = -6.80 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:05 2006