Locus 7962

Sequence ID 3R_DroMel_CAF1
Location 21,355,422 – 21,355,518
Length 96
Max. P 0.999047
window12821

overview

Window 1

Location 21,355,422 – 21,355,518
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 94.92
Mean single sequence MFE -28.44
Consensus MFE -25.48
Energy contribution -25.68
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.90
SVM decision value 3.34
SVM RNA-class probability 0.999047
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21355422 96 + 27905053
CGGCCCAUUGGCAAAACGGCAUGAAUAGUGGCCA-AAAUCAAACUUGUAUAAUGGCGCGAGGAGAACGAAAUCGAUGGCCAACUGACAACUGGCCAA
.((((..(((((......)).....(((((((((-........(((((........))))).....((....)).))))).)))).)))..)))).. ( -28.10)
>DroSec_CAF1 48356 96 + 1
CGGCCCAUUGGCAAAACGGCAUGAAUAGUGGCCA-AAAUCGAACUUGUAUAAUGGCGCGAGGAGAACGAAAUCGAUGGCCAACUGACAACUGGCCAA
.((((..(((((......)).....(((((((((-...((...(((((........)))))..)).((....)).))))).)))).)))..)))).. ( -29.20)
>DroSim_CAF1 45511 96 + 1
CGGCCCAUUGGCAAAACGGCAGGAAUAGUGGCCA-AAAUCAAACUUGUAUAAUGGCGCGAGGAAAACGAAAUCGAUGGCCAACUGACAACUGGCCAA
.((((..(((((......)).....(((((((((-........(((((........))))).....((....)).))))).)))).)))..)))).. ( -28.10)
>DroEre_CAF1 47669 96 + 1
UGGCCCAUUGGCAAAACGGCAUGAAUAGUGCCCA-AAAUCAAACUUGUAAAUUGGCGCGAGGAGACCGAAAUCGAUGGCCAACUGACAACUGGCCAA
(((((..((((......(((((.....)))))..-...))))..((((...(((((.((((....).....)))...)))))...))))..))))). ( -26.50)
>DroYak_CAF1 47877 97 + 1
UGGCCCAUUGGCAAAACGGCAUGAAUAGUGGCCAAAAAUCCAACUUGUAUAAUGGUGCGAGGAGAACGCAAUCGAUGGCCAACUGACAACUGGCCAA
(((((..(((((......)).....(((((((((.........(((((((....)))))))((........))..))))).)))).)))..))))). ( -30.30)
>consensus
CGGCCCAUUGGCAAAACGGCAUGAAUAGUGGCCA_AAAUCAAACUUGUAUAAUGGCGCGAGGAGAACGAAAUCGAUGGCCAACUGACAACUGGCCAA
.((((..(((((......)).....(((((((((.........(((((........))))).....((....)).))))).)))).)))..)))).. (-25.48 = -25.68 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:04 2006