Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,715,626 – 2,715,729 |
Length | 103 |
Max. P | 0.727686 |
Location | 2,715,626 – 2,715,729 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.69 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -19.33 |
Energy contribution | -19.80 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.09 |
Mean z-score | -3.60 |
Structure conservation index | 0.73 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2715626 103 - 27905053 AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA-----------------AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC .....(((((((((((((((.........(((-----------------((((........))))))).........)))))))))...................(....)..)))))). ( -26.77) >DroSec_CAF1 25817 103 - 1 AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA-----------------AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC .....(((((((((((((((.........(((-----------------((((........))))))).........)))))))))...................(....)..)))))). ( -26.77) >DroSim_CAF1 27001 103 - 1 AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA-----------------AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUGUAGUAAAAAGGCAACAAAAGGAUC ........((((((((((((.........(((-----------------((((........))))))).........))))))))))))...(((((.((......)).)))))...... ( -28.57) >DroEre_CAF1 26888 103 - 1 AAUUUAUCUUUGUUUUCUGCAGAACCAGUAGA-----------------AGCUGAGCAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAGAAGGCAACAAAAGGAUC .....(((((((((((((((........((((-----------------((((........))))))))........)))))))))...................(....)..)))))). ( -26.79) >DroYak_CAF1 26635 103 - 1 AAUUUAUCUUUGUUUUCUGCAGAAGCCGAAGA-----------------AGCCGAGGAGAAAGCUUCUGGAACAAAAGCGGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC .....(((((((((((((((.....((..(((-----------------(((..........)))))))).......)))))))))...................(....)..)))))). ( -22.80) >DroAna_CAF1 26186 120 - 1 AAUUUAUCUUUGUUUUCUGCACAACCAGAAGAACUCAAGCUGAAGCUGAAGCUGGAGAGGAAGCUUCUGGAACAAAAGCGAAGCGCAAAAAGUUUAUAAUAAAAAGGCAACAAAAGGAUC .....((((((......(((....(((((((..(((.((((........))))...)))....))))))).......(((...)))....................)))....)))))). ( -27.00) >consensus AAUUUAUCUUUGUUUUCUGCAGAACCAGAAGA_________________AGCUGAGGAGAAAGCUUCUGGAACAAAAGCAGAGAACAAAAAGUUUAUAGUAAAAAGGCAACAAAAGGAUC .....(((((((((((((((....(((((((................................))))))).......)))))))))...................(....)..)))))). (-19.33 = -19.80 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:20 2006