Locus 7958

Sequence ID 3R_DroMel_CAF1
Location 21,350,670 – 21,350,772
Length 102
Max. P 0.894910
window12815

overview

Window 5

Location 21,350,670 – 21,350,772
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 88.87
Mean single sequence MFE -20.67
Consensus MFE -16.21
Energy contribution -17.27
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.78
SVM decision value 0.98
SVM RNA-class probability 0.894910
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21350670 102 + 27905053
CCAAAUGCUCUUCCCAGCCAUAAAAAUGCAGCAAUGCAACGGGAAACCGCACUGAUUUCAUUUUGAAUCGCAUUCAGCAAAAAUAGAUUGAUUAAUUUCAAA
...(((((........((........((((....))))..((....))))...(((((......)))))))))).............((((......)))). ( -20.10)
>DroSec_CAF1 43597 102 + 1
CGAAAUGUUCAUCCAAGCCAUAAAAAUGCAGCAUUGCAACGGGAAACCAAACUGAUUGCAUUUUGAAUCGCAUUCAGCAAAAAUAGAUUGAUUAAUUUCAAC
.(((((..(((..(..(((((....)))..)).((((...((....))....(((.(((..........))).))))))).....)..)))...)))))... ( -20.70)
>DroEre_CAF1 42902 101 + 1
CGAAAUGCUCUUCCCAGCCAUAAAAGUGCAGCAAUGCAAAGGGAAACCGAACUGAUUUC-UUUUGAAUCGCAUUCUGCAAAAAUAGAUUGAUUAAUAUCAAA
......(((......)))........(((((.(((((...((....)).....(((((.-....)))))))))))))))........(((((....))))). ( -23.80)
>DroYak_CAF1 42997 101 + 1
CGAAAUGCUCUUCCCAGCCAUAAAAAUGCAGCAAUGCUGAGGAAAAACAAACUGAUUUC-UUUCGAAUCGCAUUCUGCAAAAACGGAUUGAUUAAUAUCAAA
((....(((......)))........(((((.(((((...(......).....(((((.-....)))))))))))))))....))..(((((....))))). ( -18.10)
>consensus
CGAAAUGCUCUUCCCAGCCAUAAAAAUGCAGCAAUGCAAAGGGAAACCAAACUGAUUUC_UUUUGAAUCGCAUUCAGCAAAAAUAGAUUGAUUAAUAUCAAA
......(((......)))........(((((.(((((...((....)).....(((((......)))))))))))))))........((((......)))). (-16.21 = -17.27 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:59 2006