Locus 7957

Sequence ID 3R_DroMel_CAF1
Location 21,350,440 – 21,350,539
Length 99
Max. P 0.699776
window12814

overview

Window 4

Location 21,350,440 – 21,350,539
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.09
Mean single sequence MFE -34.10
Consensus MFE -23.23
Energy contribution -22.20
Covariance contribution -1.03
Combinations/Pair 1.14
Mean z-score -2.28
Structure conservation index 0.68
SVM decision value 0.35
SVM RNA-class probability 0.699776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21350440 99 + 27905053
-GUCGUUCGUUUGUUAUUUGCCAUACGAAUGGGGGAAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAAACGAAG--------------------GGCGCCUUUCCCU
-..(((((((.((........)).)))))))(((((((..(((((((....)))))))(((((((((......)))).(....)...--------------------))).))))))))) ( -31.70)
>DroPse_CAF1 51628 120 + 1
CUUCUCUUGCCUGUUAUUUGCCAUAUGAAUGGAGGGAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAUACGAAGGGAAACGGAAACGGAGGGCGGGCGCCUUUCUCU
.(((((((.(((((.((((.((((....)))).((((((......)))))))))))))))...((((......)))).......)))))))..(....)(((((((....)))))))... ( -37.80)
>DroSec_CAF1 43367 99 + 1
-CUCGUUCGUUUGUUAUUUGGCAUACGAAUGGGGGAAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAAACGAAG--------------------GGCGUCUUUCCCU
-..(((((((.((((....)))).)))))))(((((((.((((((((....)))))))).(((((((......)))).(....)...--------------------)))...))))))) ( -32.40)
>DroEre_CAF1 42673 99 + 1
-CACAUUCGCUUGUUAUUUGCCAUACGAAUGGGGGAAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAAACGAAG--------------------GGCGCCUUUCCCU
-..((((((..((........))..))))))(((((((..(((((((....)))))))(((((((((......)))).(....)...--------------------))).))))))))) ( -31.00)
>DroYak_CAF1 42767 99 + 1
-CUCUUUCGUUUGUUAUUUGCCAUGCGAAUGGGGGAAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAAACGAAG--------------------GGCGCCUUUCCCU
-.((((((((((((.....(((.((((..((((..((.......))..))))..)))).))).((((......))))))))))))))--------------------))........... ( -33.90)
>DroPer_CAF1 73319 120 + 1
CUUCUCUUGCCUGUUAUUUGCCAUAUGAAUGGAGGGAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAUACGAAGGGAAACGGAAACGGAGGGCGGGCGCCUUUCUCU
.(((((((.(((((.((((.((((....)))).((((((......)))))))))))))))...((((......)))).......)))))))..(....)(((((((....)))))))... ( -37.80)
>consensus
_CUCUUUCGCUUGUUAUUUGCCAUACGAAUGGGGGAAAAUUGCAUUUUCUCAAGUGCAGGGCCGCAUUAAAUUAUGCACAAACGAAG____________________GGCGCCUUUCCCU
..............((((((.....))))))((((((...(((((((....)))))))(((((((((......)))).(....).......................))).)))))))). (-23.23 = -22.20 +  -1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:58 2006