Locus 7956

Sequence ID 3R_DroMel_CAF1
Location 21,348,390 – 21,348,503
Length 113
Max. P 0.581741
window12813

overview

Window 3

Location 21,348,390 – 21,348,503
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 87.80
Mean single sequence MFE -28.60
Consensus MFE -20.66
Energy contribution -19.97
Covariance contribution -0.69
Combinations/Pair 1.24
Mean z-score -1.54
Structure conservation index 0.72
SVM decision value 0.10
SVM RNA-class probability 0.581741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21348390 113 + 27905053
GUGCCCCACCGAGCAGAGCACCACCAUUGAUGAUAGUGGCACCAACCACCCACAUCUCGGAUUUAUUUAACUGCGUAUCCGAAGCGCUCUCCUUUUUGGGUACUUACUUAAGC
((((((....(((.(((((.........((((...((((......))))...))))((((((..............))))))...))))).)))...)))))).......... ( -33.84)
>DroSec_CAF1 41349 110 + 1
GUGCC--ACCGAGUGGAGCACGACCAUUGACGAUAGUGGCACCAACCACCCACAUCUUGGAUUUAUUUAACUGCGUAUCCGAAGCGCUCUC-UUUUUGGGUGCUUACUUAAGC
(((((--(((((((((.......)))))..))...)))))))...............(((((..............)))))((((((((..-.....))))))))........ ( -27.84)
>DroEre_CAF1 40640 101 + 1
G--CACCACCGAGC--------ACCACUGACGAUAGUGGCACCAACCACCCACAUCUCAGAU-UAUUUAACUGCGUAUCCGAAGCGCUCCC-GUUUUGGGUACUUACUUAAGC
(--(........))--------....((((.(((.((((..........)))))))))))..-..(((((.((.((((((((((((....)-))))))))))).)).))))). ( -27.20)
>DroYak_CAF1 40681 109 + 1
G--CACCACCGAGCAGAGCACCACCACUGACGAUAGUGGCAGCAACCACCCACAUCUCAGAU-UAUUUAACUGCGUAUCCGAAGCGCUCUC-UUUUUGGGUACUUACUUAAGC
(--(.(((..(((.(((((.......((((.(((.((((..........)))))))))))..-.........((.........))))))))-))..)))))............ ( -25.50)
>consensus
G__CACCACCGAGCAGAGCACCACCACUGACGAUAGUGGCACCAACCACCCACAUCUCAGAU_UAUUUAACUGCGUAUCCGAAGCGCUCUC_UUUUUGGGUACUUACUUAAGC
............((((..........((((.(((.((((..........)))))))))))..........))))((((((((((.........)))))))))).......... (-20.66 = -19.97 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:57 2006