| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,347,452 – 21,347,552 |
| Length | 100 |
| Max. P | 0.667151 |
| Location | 21,347,452 – 21,347,552 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.29 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -13.45 |
| Energy contribution | -14.53 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21347452 100 - 27905053 -CAAACUGUGCGUAAAAAG----CCGAAAAUAAUUAAGUUAACAAUUUGGCUAAUUACGCCUGCACUAAAUGCAGUUAAAACAACGCACAAUUAAG-CCGCCAGAA-------------- -.....(((((((....((----(((((.................)))))))........(((((.....)))))........)))))))......-.........-------------- ( -21.93) >DroPse_CAF1 48112 119 - 1 CCAAACUAUGCAUAAGAUGUGGCCCAAAAAUAAUUAAGUUAACAAUUUGGCUAAUUACGACUGCACUAAAUGCAUUUAAACCAACGCACAAUUAAC-CCAGAAGAACCCAGAGGCAAACA .....................((((.....((((((.(((((....)))))))))))....((((.....))))......................-.............).)))..... ( -11.10) >DroSec_CAF1 40455 101 - 1 -CAAACUGUGCGUAAGAAG----CCGAAAAUAAUUAAGUUAACAAUUUGGCUAUUUACGCCUGCACUAAAUGCAGUUAAAACAACGCACAAUUAACAACGCCACAA-------------- -.....((((((((((.((----(((((.................))))))).)))))..(((((.....)))))..........)))))................-------------- ( -23.63) >DroEre_CAF1 39719 100 - 1 -CAAACUGUGCGUAAGAAG----CCAAAAAUAAUUAAGUUAACAAUUUGGCUAAUUACGCCUGCACUAAAUGCAGUUAAAACAAUGCACAAUUAAG-CCGCCAGAA-------------- -.....(((((((((..((----(((((.................)))))))..))))..(((((.....)))))..........)))))......-.........-------------- ( -23.23) >DroYak_CAF1 39751 100 - 1 -CAAACUGUGCGUAAGAUG----CCAAAAAUAAUUAAGUUAACAAUUUGGCUAAUUACGCCUGCACUAAAUGCAGUUAAAACAACGCACAAUUAAG-CCGCCACAA-------------- -.....(((((((((...(----(((((.................))))))...))))..(((((.....)))))..........)))))......-.........-------------- ( -22.03) >DroPer_CAF1 69822 119 - 1 CCAAACUAUGCAUUAGAUGUGGCCCAAAAAUAAUUAAGUUAACAAUUUGGCUAAUUACGACUGCACUAAAUGCAUUUAAACCAACGCACAAUUAAC-CCAGAAGAACCCAGAGGCAAACA .......(((((((((.((..(.(......((((((.(((((....))))))))))).).)..)))).))))))).....................-....................... ( -12.50) >consensus _CAAACUGUGCGUAAGAAG____CCAAAAAUAAUUAAGUUAACAAUUUGGCUAAUUACGCCUGCACUAAAUGCAGUUAAAACAACGCACAAUUAAC_CCGCCAGAA______________ ......(((((((.................((((((.(((((....)))))))))))...(((((.....)))))........))))))).............................. (-13.45 = -14.53 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:56 2006