| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,343,961 – 21,344,055 |
| Length | 94 |
| Max. P | 0.957021 |
| Location | 21,343,961 – 21,344,055 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 75.81 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -13.26 |
| Energy contribution | -15.65 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.957021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21343961 94 + 27905053 GAGGGAGAGCGGCAGAGCUUCAGCGCAGCACGGCGAAAUUCGCUGAG---CUCGCCUUAAACAGUUCGCAGCCGCUCCUUCA------CCGUUAGUUAAAAAA ((((((..(((((.(((((...(((.(((.(((((.....))))).)---))))).......)))))...))))))))))).------............... ( -37.80) >DroGri_CAF1 35297 80 + 1 -----UGAGCGG-CGAGCUUGCUUG-----------CAUUUGUGACGCUCUUCGCUUUAGUCGUUGCUGAAGCGCUCCUUUA------GUUUCAGUUGACAAA -----.((((((-.(((((..(...-----------.....)..).)))).))))))..((((..((((((((.........------))))))))))))... ( -28.90) >DroSec_CAF1 37070 94 + 1 GAGAGAGAGCGGCUGAGCUUCAGCGCAGCUCGGCGAAAUUCGCUGAG---CUCGCCUUAAACAGUUCGCAGCCGUUCCUUCA------CCGUUAGUUAAAAAA ..(((.(((((((((.(((...(((.(((((((((.....)))))))---))))).......)))...))))))))).))).------............... ( -39.90) >DroSim_CAF1 36643 94 + 1 GAGGGAGAGCGGCUGAGCUUCAGCGCAGCUCGGCGAAAUUCGCUGAG---CUCGCCUUAAACAGUUCGCAGCCGUACCUUCA------CCGUUAGUUAAAAAA (((((...(((((((.(((...(((.(((((((((.....)))))))---))))).......)))...))))))).))))).------............... ( -39.80) >DroEre_CAF1 36186 100 + 1 GUCAGAGAGCGGGAGAGCUUCAGCGCAGUUCGCCGAAAUUCGCUGAG---CUCGCCUUAAACAGUUGGCAGCCGCUCCUUCAGCCGCUCCGUUAGUUAAAAAA ...((.((((((..(((((.(((((.((((......)))))))))))---)))(((..........)))..))))))))........................ ( -33.00) >DroYak_CAF1 36206 94 + 1 GAAAGAGAGCGUGAGAGCUUCAGCGCAGCUCGGCGAAAUUCACGGAG---CUCGCCUUAAACAGUUCGCAGCCGCUCCUUCA------CCGUUAGUUAAAAAA (((.(.(((((((.(((((...(((.(((((.(.(.....).).)))---))))).......))))).))..))))))))).------............... ( -27.10) >consensus GAGAGAGAGCGGCAGAGCUUCAGCGCAGCUCGGCGAAAUUCGCUGAG___CUCGCCUUAAACAGUUCGCAGCCGCUCCUUCA______CCGUUAGUUAAAAAA ......((((((..(((((...(((...(((((((.....))))))).....))).......)))))....)))))).......................... (-13.26 = -15.65 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:53 2006