Locus 7952

Sequence ID 3R_DroMel_CAF1
Location 21,341,961 – 21,342,051
Length 90
Max. P 0.980355
window12808

overview

Window 8

Location 21,341,961 – 21,342,051
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 94.75
Mean single sequence MFE -20.00
Consensus MFE -17.70
Energy contribution -18.38
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.89
SVM decision value 1.86
SVM RNA-class probability 0.980355
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21341961 90 - 27905053
AAUUCAAGCUUUGUUUGUUUGUUUAUUUUCCAUUAGCCCACUU--CGGUUUCGAUUUCGAUUUUCGGCCCAGUCCAGAAUCAAGUUAAGACC
....(((((.......)))))......................--.(((((..((((.((((((.(((...))).))))))))))..))))) ( -15.80)
>DroSec_CAF1 35079 85 - 1
AAUUCGAGCUUUGUUUGUUUGUUUAUUUUCCAUUAGCCCACUU--UGGUUUCGAUUUCGAUUUUGGGCCC-----AGAAUCAAGUUAAGACC
....(((((.......)))))......................--.(((((..((((.(((((((....)-----))))))))))..))))) ( -17.40)
>DroSim_CAF1 34298 90 - 1
AAUUCGAGCUUUGUUUGUUUGUUUAUUUUCCAUUAGCCCACUU--CGGUUUCGAUUUCGAUUUUGGGCCCAGUCCAGAAUCAAGUUAAGACC
....(((((.......)))))......................--.(((((..((((.((((((((((...))))))))))))))..))))) ( -22.00)
>DroEre_CAF1 34168 92 - 1
AAUUCGAGCUUUGUUUGUUUGUUUAUUUUCCAUUAGCCCACUUCUCGGUUUCGAUUUCGAUUUUGGGCCCAGUCCAGAAUCAAGUUAAGACC
....(((((.......))))).........................(((((..((((.((((((((((...))))))))))))))..))))) ( -22.00)
>DroYak_CAF1 34168 92 - 1
AAUUCGAGCUUUGUUUGUUUGUUUAUUUUCCAUUAGCCCACUUCUCGGUUUCGAUUUCGAUUUUGGGCCCAGUCCAGAAUCAAGUCAAGACC
....(((((.......))))).........................(((((.(((((.((((((((((...))))))))))))))).))))) ( -22.80)
>consensus
AAUUCGAGCUUUGUUUGUUUGUUUAUUUUCCAUUAGCCCACUU__CGGUUUCGAUUUCGAUUUUGGGCCCAGUCCAGAAUCAAGUUAAGACC
....(((((.......))))).........................(((((.(((((.((((((((((...))))))))))))))).))))) (-17.70 = -18.38 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:52 2006