Locus 7951

Sequence ID 3R_DroMel_CAF1
Location 21,336,294 – 21,336,387
Length 93
Max. P 0.780714
window12807

overview

Window 7

Location 21,336,294 – 21,336,387
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 85.47
Mean single sequence MFE -29.72
Consensus MFE -23.05
Energy contribution -23.88
Covariance contribution 0.84
Combinations/Pair 1.19
Mean z-score -2.60
Structure conservation index 0.78
SVM decision value 0.56
SVM RNA-class probability 0.780714
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21336294 93 - 27905053
UGCGAAUGGCGAUGGAACUUGACUUUAUGAGCACAUAAAGUUCGCCUGUUGCCACAUGAGACUUCGGUCUCAUCUCAUUAGGGA-----AACUUU-UCC
...((.(((((((((.....(((((((((....)))))))))...))))))))).(((((((....))))))).))...(((..-----..))).-... ( -32.30)
>DroGri_CAF1 26713 93 - 1
UCCGGCU--GUUUGGCAGCUG-GUUUACGAGCACAUAAAGUUCCCC---AGCCACAUGAGUCUCGUGGCUCGACUCAUUAGAAACUGAAAACUUUGGAU
.((((((--(.....))))))-)............(((((((...(---((....(((((((.........)))))))......)))..)))))))... ( -24.60)
>DroSec_CAF1 29307 93 - 1
UGCGAAUGGCGAUGGAACUUGACUUCAUGAGCACAUAAAGUUCGCCUGUUGCCACAUGAGACUUCGGUCUCAUCUCAUUAGGGA-----AACUUU-UCC
...((.(((((((((.....(((((.(((....))).)))))...))))))))).(((((((....))))))).))...(((..-----..))).-... ( -28.40)
>DroSim_CAF1 28635 93 - 1
UGCGAAUGGCGAUGGAACUUGACUUUAUGAGCACAUAAAGUUCGCCUGUUGCCACAUGAGACUUCGGUCUCAUCUCAUUAGGGA-----AACUUU-UCC
...((.(((((((((.....(((((((((....)))))))))...))))))))).(((((((....))))))).))...(((..-----..))).-... ( -32.30)
>DroEre_CAF1 28595 93 - 1
UGCGAAUGGCGAUGGAACUUGGCUUUAUGAGCACAUAAAGUUCGCCUGUUGCCACAUGAGACUUUGGUCUCAUCUCAUUAGGAA-----AACUUU-UCC
...((.(((((((((.....(((((((((....)))))))))...))))))))).(((((((....))))))).))....((((-----.....)-))) ( -28.00)
>DroYak_CAF1 28441 93 - 1
UGCGAAUGGCGAUGGAACUUGGCUUUAUGAGCACAUAAAGUUCGCCUGUUGCCACAUGAGACUUCGGUCUCAUCUCAUUAGGAA-----AACUUU-GCC
.((((((((((((((.....(((((((((....)))))))))...))))))))).(((((((....)))))))...........-----...)))-)). ( -32.70)
>consensus
UGCGAAUGGCGAUGGAACUUGACUUUAUGAGCACAUAAAGUUCGCCUGUUGCCACAUGAGACUUCGGUCUCAUCUCAUUAGGAA_____AACUUU_UCC
...((.(((((((((.....(((((((((....)))))))))...))))))))).(((((((....))))))).))....................... (-23.05 = -23.88 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:51 2006