Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,715,385 – 2,715,502 |
Length | 117 |
Max. P | 0.995858 |
Location | 2,715,385 – 2,715,502 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.59 |
Mean single sequence MFE | -43.10 |
Consensus MFE | -38.64 |
Energy contribution | -38.58 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.10 |
Mean z-score | -2.35 |
Structure conservation index | 0.90 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2715385 117 - 27905053 CUU--CCGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA ...--((((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... ( -43.80) >DroSec_CAF1 25587 113 - 1 ------CGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA ------(((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))((((.....(....).....))))... ( -41.80) >DroSim_CAF1 26762 117 - 1 CUU--CCGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA ...--((((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... ( -43.80) >DroEre_CAF1 26650 117 - 1 CUU--CCGUGGA-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA ...--((((((.-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... ( -43.80) >DroYak_CAF1 26393 119 - 1 CUCCGCCGUGGG-CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA ....(((((.((-(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).))))))))))........)))))................. ( -45.70) >DroAna_CAF1 25869 118 - 1 CUU--CUGGGUUCUGGGGUGUAUUGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA ...--....(((((..(((..((((((.((((((((((((.((((.((....)).)))).))....))))))))))..((((...(((...)))..))))))))))..))).)))))... ( -39.70) >consensus CUU__CCGUGGG_CGGAGUGUAUCGCCAACGUGUGACACAUUUCUGCUUUUAAGGAGGAUUGCAUUUGUUACGCGUGCGUUGCCUCCGCUACGGUUCAACGGCAAUCGAUCAAGAGCAAA .....((((((..(((((.(((.(((..((((((((((((.((((.((....)).)))).))....))))))))))))).)))))))))))))).......((..((......))))... (-38.64 = -38.58 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:19 2006