Locus 7949

Sequence ID 3R_DroMel_CAF1
Location 21,329,284 – 21,329,378
Length 94
Max. P 0.741508
window12804

overview

Window 4

Location 21,329,284 – 21,329,378
Length 94
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 70.65
Mean single sequence MFE -27.33
Consensus MFE -8.60
Energy contribution -7.88
Covariance contribution -0.72
Combinations/Pair 1.29
Mean z-score -2.09
Structure conservation index 0.31
SVM decision value 0.45
SVM RNA-class probability 0.741508
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21329284 94 - 27905053
CUUCGAUUA-CGGGAAACUUG-AAGUGUCUGUCCGGAUCUGCGGCUCAUAAAUAUUGAGCACAUUAUGUCAGGAGCA------GACAAAAAAAAAA---AACAAA
(((((....-.((....))))-)))(((((((((.(((.((..(((((.......)))))....)).))).))).))------)))).........---...... ( -25.10)
>DroPse_CAF1 21093 99 - 1
CUUCGAUCUCCGCAAGACUUGCAAAAGUCUGUCAAGAUUUGUGGCCCAUAAAUAUGGGGCGCACAUCAUCAGGAACC------GUCGGACUUUACAUGGGAGAGG
......((((((((.....))).((((((((.(..(((.((((.(((((....))))).)))).)))....(....)------).)))))))).....))))).. ( -36.40)
>DroSec_CAF1 21952 96 - 1
CUUCGAUUA-CGGGAAACUUG-AAGUGUCUGUGCGGAUCUGCGGCUCAUAAAUAUUGAGCACAUUAUGUCAGGAGCAGGAGCAGGCAAAAAGAA-------AAAA
(((((....-.((....))))-)))(((((((.....(((((.(((((.......)))))((.....)).....))))).))))))).......-------.... ( -24.90)
>DroSim_CAF1 21107 103 - 1
CUUCGAUUA-CGGGAAACUUG-AAGUGUCUGUGCGGAUCUGCGGCUCAUAAAUAUUGAGCACAUUAUGUCAGGAGCAGGAGCAGGCAAAAAAAAAAACAAAAAAA
(((((....-.((....))))-)))(((((((.....(((((.(((((.......)))))((.....)).....))))).))))))).................. ( -24.90)
>DroEre_CAF1 21844 92 - 1
CUUCGAUUA-CGGGAAACUUG-AAGUGUCUGUCCGGAUCUGCGGCCCAUAAAUAUUGAGCACAUUAUGUCAGGAGCA------GGAGCAGGCAAAAAAAA-----
(((((....-.((....))))-)))(((((((.....(((((..((.....(((.((....)).)))....)).)))------)).))))))).......----- ( -20.50)
>DroPer_CAF1 37728 99 - 1
CUUCGAUCUCCGCAAGACUUGCAAAAGUCUGUCAAGAUUUGUGGCCCAUAAAUAUGGGGCGCACAUCAUCAUCAACA------GUCGGACUUUACAUGGGAGAGG
......((((((((.....))).((((((((.(..(((.((((.(((((....))))).)))).)))..........------).)))))))).....))))).. ( -32.20)
>consensus
CUUCGAUUA_CGGGAAACUUG_AAGUGUCUGUCCGGAUCUGCGGCCCAUAAAUAUUGAGCACAUUAUGUCAGGAGCA______GGCAAAAAAAAAA___AAAAAA
....(((................((.((((....))))))...(((((.......))))).......)))................................... ( -8.60 =  -7.88 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:48 2006