Locus 7948

Sequence ID	3R_DroMel_CAF1
Location	21,329,118 – 21,329,210
Length	92
Max. P	0.938017

overview

Window 3

Location	21,329,118 – 21,329,210
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	96.09
Mean single sequence MFE	-21.26
Consensus MFE	-18.78
Energy contribution	-18.62
Covariance contribution	-0.16
Combinations/Pair	1.04
Mean z-score	-1.63
Structure conservation index	0.88
SVM decision value	1.27
SVM RNA-class probability	0.938017
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21329118 92 - 27905053
GGUUCAAUGGCAGUGACAGCAGCCAAGAGGGUUGAAAUGUAAUGAAGAAAAGGGAGCGAAAUACCGGUGCUGAAAAGCUGACAAAAGGCCAG
((((...((.((((.(((.(((((.....)))))...)))...........((.(.((......)).).)).....)))).))...)))).. ( -20.00)
>DroSec_CAF1 21786 92 - 1
GGUUCAAUGGCAGUGACAGCAGCCAAGAGGGUUGAAAUGUAAUGAAGAAAAGGGGGCGAAACACCGGUGCUGAAAAGCUGACAAAAGGCCAG
.......((((..(((((.(((((.....)))))...))).............((........))...(((....)))...))....)))). ( -20.40)
>DroSim_CAF1 20942 91 - 1
GGUUCAAUGGCAGUGACAGCAGCCAAGAGGGUUGAAAUGUAAUGAAGAAAAGG-GGCGAAACACCGGUGCUGAAAAGCUGACAAAAGGCCAG
.......((((..(((((.(((((.....)))))...)))............(-(........))...(((....)))...))....)))). ( -20.40)
>DroEre_CAF1 21683 92 - 1
GGUUCAAUGGCAGUGACAGCAGCCAAGAGGGUUGAAAUGUAAUGAAGAAAAGGGGGCGAAACUCCGAUGCUGAAAAGCUGACAAAAGGCCAG
.......((((..(((((.(((((.....)))))...)))...........((((......))))...(((....)))...))....)))). ( -24.40)
>DroYak_CAF1 20946 92 - 1
GGUUCAAUGGCAGUGACAGCAGCCAAGAGGGUUGAAAUGUAAUGAAGAAAAGGGGGCGGAACUGCGAUGCUGAAAAGCUGACAAAAGGCCUG
((((..((.(((((.(((.(((((.....)))))...)))....................))))).))(((....)))........)))).. ( -21.10)
>consensus
GGUUCAAUGGCAGUGACAGCAGCCAAGAGGGUUGAAAUGUAAUGAAGAAAAGGGGGCGAAACACCGGUGCUGAAAAGCUGACAAAAGGCCAG
((((...((.((((.(((.(((((.....)))))...)))...........((.(.((......)).).)).....)))).))...)))).. (-18.78 = -18.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:48 2006