Locus 7946

Sequence ID 3R_DroMel_CAF1
Location 21,326,163 – 21,326,265
Length 102
Max. P 0.615455
window12799

overview

Window 9

Location 21,326,163 – 21,326,265
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.09
Mean single sequence MFE -22.78
Consensus MFE -14.73
Energy contribution -15.37
Covariance contribution 0.64
Combinations/Pair 1.28
Mean z-score -1.16
Structure conservation index 0.65
SVM decision value 0.17
SVM RNA-class probability 0.615455
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21326163 102 - 27905053
AAAGUCGGCUGCUAAUUACGCAAAUGUU-UCAACUUUAAAACGGCGAUGCCAUUUCACGCGCCCUGCGUGUGAAAUUUAUAAAUGUCAACUGCAGGA---------------GC-CACC-
......((((.((......(((..((..-.((..........(((...)))(((((((((((...))))))))))).......)).))..))))).)---------------))-)...- ( -27.30)
>DroVir_CAF1 13671 112 - 1
----GCUAUUGCUAAUUACGCAAAUGUUCUUAACUUUAAAAUUGCGACGCCAUUUUAUGCGCCCUGCGUGUGAAAUUUACA-GCGACAAC-ACAACACCCUAUUCUCUCCAGGC-CACG-
----......(((.....(((((..................))))).(((.(((((((((((...))))))))))).....-))).....-....................)))-....- ( -17.37)
>DroPse_CAF1 17709 100 - 1
--GCUCUGCUGCUAAUUACGCAAAUGUU-UCAACUUUAA-AUGGCGUCGCCAUUUCACGCGCCCUGCGUGUGAAAUUUAUAAAUGUCAACUGCAUGC---------------CC-CAUCA
--((..((((((.......)))......-..........-.((((((....(((((((((((...)))))))))))......))))))...))).))---------------..-..... ( -23.40)
>DroGri_CAF1 14249 112 - 1
----GCUGCUGCUAAUUACGCAAAUGUU-UUAACUUUAAAAUGGCGUUGCCAUUUCACGCGUUCUGCCCGUCACAUUUACA-ACGACAACUGCCACACUAAGCA-CACCCAACUAGACA-
----..((((((.....((((....((.-...))....(((((((...)))))))...))))...))..(((.........-..))).............))))-..............- ( -16.10)
>DroEre_CAF1 18691 96 - 1
AAAGUCGCCUGCUAAUUACGCAAAUGUU-UCAACUUUAAAACGGCGAUGCCAUUUCACGCGCCCUGCGUGUGAAAUUUAUAAAUGUCAACUGCAGUA-----------------------
...(((((((((.......)))...(((-(........))))))))))...(((((((((((...))))))))))).....................----------------------- ( -25.50)
>DroYak_CAF1 17476 102 - 1
AAAGUCGCCUGCUAAUUACGCAAAUGUU-UCAACUUUAAAACGGCGAUGCCAUUUCACGCGCCCUGCGUGUGAAAUUUAUAAAUGUCAACUGCAGGA---------------GC-CACC-
...(((((((((.......)))...(((-(........)))))))))).(((((((((((((...))))))))))).......(((.....))))).---------------..-....- ( -27.00)
>consensus
__AGUCGGCUGCUAAUUACGCAAAUGUU_UCAACUUUAAAACGGCGAUGCCAUUUCACGCGCCCUGCGUGUGAAAUUUAUAAAUGUCAACUGCAGGA_______________GC_CACC_
........((((..............................(((...)))(((((((((((...)))))))))))...............))))......................... (-14.73 = -15.37 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:44 2006