| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,324,602 – 21,324,706 |
| Length | 104 |
| Max. P | 0.981702 |
| Location | 21,324,602 – 21,324,706 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.11 |
| Mean single sequence MFE | -31.75 |
| Consensus MFE | -19.04 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21324602 104 + 27905053 AGAGC-------C--CCAAAAAUUUGUCAAAGGCAUCAUCACGAAUGGAGCUGAGGCGCCCAAAGGAUCUAGUUCCGUUCGUGGUUGAUAAAUCAAACGAGAUUGGAUA----UAAA .....-------.--((((...(((((.......((((((((((((((((((((....((....)).)).)))))))))))))).)))).......))))).))))...----.... ( -30.84) >DroPse_CAF1 15088 115 + 1 AGAGCGAGCAGCCCCCAAAAAAUUUGUCAGGGU--GCAGCUAGGUUGGAACUGCGGUUUUUAGAAGAUCUAGUUCGGUUCAUGAUUAAUGAACAUAACUGGAUUAAAUAGGCGUAGC ..(((.(((.((.(((.............))).--)).)))..)))....(((((.((.......(((((((((..((((((.....))))))..)))))))))....)).))))). ( -32.32) >DroSec_CAF1 16932 103 + 1 AGCGC-------CC-CCAAAAAUUUGUCAAAGG--GCAUCACGAAUGGAGCUGAGGCCACCAAAGGAGCUAGUUCGGUUCGUGGUUGAUAAACUAAUCGGGAUAGAAUA----UAAC .....-------((-(......(((((((....--..(((((((((.((((((...((......))...)))))).))))))))))))))))......)))........----.... ( -29.60) >DroSim_CAF1 16045 93 + 1 AGAGC-------CC-CCAAAAAUUUGUCAAAGG--GCAUCACGAAUGGAGCUGAGGCCACCAAAGGAGCUAGUUCGGUUCGUGGUUGAUAAACUAAUCGGGAU-------------- .....-------((-(......(((((((....--..(((((((((.((((((...((......))...)))))).))))))))))))))))......)))..-------------- ( -29.60) >DroEre_CAF1 15913 96 + 1 AGAGC-------C--CCAAAAAUUUGUCAAGGG--GCAUCACGGAUGGAGCUGAGGCC-CCAAAGGAGCUAGUUCGGUUCGUGGCUGAUGAACUGAUCGCCAUGAUAG--------- ...((-------(--((.............)))--))(((((((((.(((((..((((-(....)).)))))))).))))))(((.(((......))))))..)))..--------- ( -34.62) >DroYak_CAF1 15772 102 + 1 AGAGC-------C--CCAAAAAUUUGUCAAAGG--GCAUCACGAAUGGAGCUGAGGCCCCCAAAGGAGCUAGUUCGGUUCGUGGUUGAUAAACUGAUUGGAAUUGGAGG----UAAC ...((-------(--((((...(((((((....--..(((((((((.(((((..(((.((....)).)))))))).))))))))))))))))((....))..)))).))----)... ( -33.50) >consensus AGAGC_______C__CCAAAAAUUUGUCAAAGG__GCAUCACGAAUGGAGCUGAGGCCACCAAAGGAGCUAGUUCGGUUCGUGGUUGAUAAACUAAUCGGGAUUGAAUA____UAAC ......................(((((((........(((((((((.((((((...((......))...)))))).))))))))))))))))......................... (-19.04 = -19.27 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:43 2006