| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,324,338 – 21,324,436 |
| Length | 98 |
| Max. P | 0.506560 |
| Location | 21,324,338 – 21,324,436 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 87.79 |
| Mean single sequence MFE | -30.26 |
| Consensus MFE | -24.10 |
| Energy contribution | -23.78 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21324338 98 - 27905053 --------------CAAAUACCCAGCUCCACCUCACAUUCGGUGGAACAGGCCAAUAAAAGGCGCAUUCUCUAUGUGCUCCAGACGCCUUUGUGUCACGUGGCAAUUUUCGC --------------..........((((((((........))))))....((((......(((((((.....)))))))...(((((....)))))...)))).......)) ( -29.70) >DroSec_CAF1 16649 112 - 1 AAACCCAUCGCAGCCAAAUCCCCAGCUCCAGCUCACAUUCGGCGGAGCAGGCCAAUAAAAGGCGCAUUCUCCAUGUGCUCCAGACGCCUUUGUGUCACGUGGCAAUUUUCGC .........((.............(((((.(((.......))))))))..((((......(((((((.....)))))))...(((((....)))))...)))).......)) ( -31.50) >DroSim_CAF1 15762 112 - 1 AAACCCAUCGCAGCCAAAUCCCCAGCUCCAGCUCACAUUCGGUGGAGCAGGCCAAUAAAAGGCGCAUUCUCUAUGUGCUCCAGACGCCUUUGUGUCACGUGGCAAUUUUCGC .........((.............((((((.(........).))))))..((((......(((((((.....)))))))...(((((....)))))...)))).......)) ( -32.80) >DroEre_CAF1 15614 106 - 1 AAACCCAGCGCAGCCAAAUCCCC------AACUCACAUUCGGUGGAGCCGGCCAAUAAAAGGCGCAUUCUGUAUGUGCUCCAGACGCCUUUGUGUCACGUGGCCAUUUUCGC .......(((........(((((------...........)).)))...(((((......(((((((.....)))))))...(((((....)))))...))))).....))) ( -29.20) >DroYak_CAF1 15464 106 - 1 AAACCCAUCGCAGCCAAAUCCCC------AACUCACAUUCGGUGGAGCUGGCCAAUAAAAGGCGCAUUCUGUAUGUGCUCCAGACGCCUUUGUGUCACGUGGCAAUUUUCGC ..........((((....(((((------...........)).)))))))((((......(((((((.....)))))))...(((((....)))))...))))......... ( -28.10) >consensus AAACCCAUCGCAGCCAAAUCCCCAGCUCCAACUCACAUUCGGUGGAGCAGGCCAAUAAAAGGCGCAUUCUCUAUGUGCUCCAGACGCCUUUGUGUCACGUGGCAAUUUUCGC .........................................((((((...((((......(((((((.....)))))))...(((((....)))))...))))...)))))) (-24.10 = -23.78 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:42 2006