Locus 7943

Sequence ID 3R_DroMel_CAF1
Location 21,316,457 – 21,316,567
Length 110
Max. P 0.642539
window12796

overview

Window 6

Location 21,316,457 – 21,316,567
Length 110
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 77.91
Mean single sequence MFE -13.65
Consensus MFE -12.94
Energy contribution -12.75
Covariance contribution -0.19
Combinations/Pair 1.12
Mean z-score 1.51
Structure conservation index 0.95
SVM decision value 0.23
SVM RNA-class probability 0.642539
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21316457 110 - 27905053
GCAGAUGUUUUUUGGUCAACAAAACAAAACAGCCGCCGCUUCGCCGCCGAGCAAGCAAAUAUACAAAAAU--------ACGAAAAUACCAAAAUACAAGAAAGUCGGUCAGGGAGAAC
.....(((.(((((((.....................((((.((......))))))...(((......))--------).......))))))).)))..................... ( -12.40)
>DroSim_CAF1 7584 118 - 1
GCAGAUGUUUUUUGGUCAACAAAACAAAACAGCCGCCGCUGCGCCGCCGAGCAAGCAAAUAUACAAAAAUACAAAAGUACGAAAAUACCAAAAUACGAGAAAGUCGGUCAGGGAGAAC
((((.(((((((((.....)))...)))))).......)))).((((((((....).............(((....)))........................)))))..))...... ( -14.50)
>DroEre_CAF1 8667 87 - 1
GCAGAUGUUUUUUGGUCAACAAAACAAAACAGCCGCCGCUGCGCCGCCGAGCAAGCACA-------------------------------GAAAUCGAGAAAGUCGGUCAGAGGGAAC
.......(((((((..(.((.........((((....)))).((......)).......-------------------------------............)).)..)))))))... ( -13.40)
>DroYak_CAF1 7839 86 - 1
GCAGAUGUUUUUUGGUCAACAAAACAAAACAGCCGCCGCUGCGCCGCCGAGCAAGCAAA--------------------------------AAUACGUGAAAGUCGGUCAGAGAGAAC
.......(((((((..(.((...((....((((....)))).((......)).......--------------------------------.....))....)).)..)))))))... ( -14.30)
>consensus
GCAGAUGUUUUUUGGUCAACAAAACAAAACAGCCGCCGCUGCGCCGCCGAGCAAGCAAA_______________________________AAAUACGAGAAAGUCGGUCAGAGAGAAC
.......(((((((..(.((.........((((....)))).((......))..................................................)).)..)))))))... (-12.94 = -12.75 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:41 2006