| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,314,509 – 21,314,628 |
| Length | 119 |
| Max. P | 0.768715 |
| Location | 21,314,509 – 21,314,628 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.80 |
| Mean single sequence MFE | -43.40 |
| Consensus MFE | -19.92 |
| Energy contribution | -19.57 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21314509 119 + 27905053 GACGCUCCAUCUGCUUGAGCGGCGUGCCCGACUCCUUGGCAUAGUGCUCCAGAAUGGAUCGCAGCUUCUCGCUCCU-AAGGACGUGCUGCUUGAGCUUUUGCGGAUUGAGAUACUUUUCG ....(((.((((((..((((((((.((.((..(((((((....(((.(((.....))).)))(((.....))).))-))))))).))))))...))))..)))))).))).......... ( -40.80) >DroVir_CAF1 6428 119 + 1 GCUGCUCCAGCUGCUUUAGAGGCUGUCUCGUCUCCCGCGCAUAAUGCACCAACAGAGCGCGCAGCUUAUCGCUGCG-CAGCACAUGCUGUUUCAGUUUUUGUGGAUUCAAGUACCGUUCA (((..(((.(((((....(((((......)))))..((((....((......))..))))(((((.....))))))-))))(((.((((...))))...))))))....)))........ ( -37.50) >DroPse_CAF1 6018 119 + 1 GCUGCUGCAUCUUCUUCAGCGGCUGCUGCGUCUCCCGUGCAUAGUGCUCCAGUAUGGAGCGCAGUUUUUCACUGCC-CAGCACGUGCUGUUUGAGCUUCUGCGGAUUCAGAUAGCGCUCG (((((((.(......)))))))).............((((.....(((((.....)))))(((((.....))))).-..))))((((((((((((((.....)).))))))))))))... ( -47.10) >DroMoj_CAF1 5704 119 + 1 GCUGCUCCAGCUGUUUGAUCGGCUGCCCUGUCUGUUGCGCGUAGUGUUCCAGCAGUGAGCGCAGCUUCUCGCUGCG-UAGCACAUGCUGUUUGAGCUUCUGGGGAUUUAAAUAGCGUUCA (((((((((((((......))))))..(((.(((..((((...))))..)))))).))))(((((.....))))).-.)))..((((((((((((((.....)).))))))))))))... ( -46.20) >DroAna_CAF1 5731 119 + 1 GUUGUUCGAGCUGUUUUACAGACUGGCCGGAUUCUUUGGCAUAAUGCUCCACAAUGGAGCGCAACUUCUCACUCUU-GAGGACAUGUUGCUUUAGCUUUUGAGGAUUCAGGUAACGCUCG ......(((((.(((.....)))..(((((((((((.(((.....(((((.....)))))(((((((((((....)-)))))...)))))....)))...)))))))).)))...))))) ( -41.70) >DroPer_CAF1 6212 120 + 1 GCUGCUGCAUCUUCUUCAGCGGCUGCUGCGUCUCCCGUGCAUAGUGCUCCAGUAUGGAGCGCAGUUUUUCACUGCCCCAGCACGUGCUGUUUGAGCUUCUGCGGAUUCAGAUAGCGCUCG (((((((.(......)))))))).............((((.....(((((.....)))))(((((.....)))))....))))((((((((((((((.....)).))))))))))))... ( -47.10) >consensus GCUGCUCCAGCUGCUUCAGCGGCUGCCCCGUCUCCCGCGCAUAGUGCUCCAGAAUGGAGCGCAGCUUCUCACUGCC_CAGCACAUGCUGUUUGAGCUUCUGCGGAUUCAGAUAGCGCUCG (((((((.........)))))))...........(((((...((((((((.....)))))(((((.......(((....)))...)))))....)))..)))))................ (-19.92 = -19.57 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:40 2006