Locus 7940

Sequence ID 3R_DroMel_CAF1
Location 21,307,968 – 21,308,088
Length 120
Max. P 0.880926
window12793

overview

Window 3

Location 21,307,968 – 21,308,088
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -46.83
Consensus MFE -46.05
Energy contribution -46.50
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.98
SVM decision value 0.92
SVM RNA-class probability 0.880926
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21307968 120 + 27905053
UGCGGAUUCGCGCCGAGAUACGGAUGAGGAGUUGGAGUCGUCUGUGGUCAAAGGUGUUGCGGCAUCUGUGUGACGGGCGUUGGGGUUUUUCUUUCCCAUAGGUAACCGGCUGUUUAUCCG
.(((....))).........((((((((.((((((...(((((((.(.((.((((((....)))))).))).))))))).(((((........))))).......)))))).)))))))) ( -45.80)
>DroSim_CAF1 36656 120 + 1
UGCGGAUUCGCGCCGGGAUACGGAUGAGCAGUUGGAGUCUUCUGUGGUCAAAGGUGUUGCGGCAUCUGUGUGACGGGCGUUGGGGUUUUUCUUUCCCAUAGGUAACCGGCUGUUUAUCCG
.(((....))).........(((((((((((((((.((((......((((.((((((....))))))...))))))))..(((((........))))).......))))))))))))))) ( -45.60)
>DroYak_CAF1 38108 120 + 1
UGCGGAUUCGCGCCCAGAUACGGAUGAGCAGUUGGAGUCGUCUGUGGUCAAAGGUGUUGCGGCAUCUGUGUGACGGGCGUUGGGGUUUUUCUUUCCCAUAGGUAACCGGCUGUUUGUCCG
.(((....))).........((((..(((((((((...(((((((.(.((.((((((....)))))).))).))))))).(((((........))))).......)))))))))..)))) ( -49.10)
>consensus
UGCGGAUUCGCGCCGAGAUACGGAUGAGCAGUUGGAGUCGUCUGUGGUCAAAGGUGUUGCGGCAUCUGUGUGACGGGCGUUGGGGUUUUUCUUUCCCAUAGGUAACCGGCUGUUUAUCCG
.(((....))).........(((((((((((((((...(((((((.(.((.((((((....)))))).))).))))))).(((((........))))).......))))))))))))))) (-46.05 = -46.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:38 2006