| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,713,864 – 2,713,967 |
| Length | 103 |
| Max. P | 0.969634 |
| Location | 2,713,864 – 2,713,967 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.34 |
| Mean single sequence MFE | -28.94 |
| Consensus MFE | -11.12 |
| Energy contribution | -11.56 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2713864 103 + 27905053 CACCAAAUGACUGAGUGGAGGUCAAAUUGACGUCCAUU-CGGACUAAAGAUCAGGUUAUCUA-AAAGCUAGG-----ACAAUG------CUGAGACAUCUAGCAUGACUUGUA----AUU ..........(((((((((.(((.....))).))))))-))).........((((((.((((-.....))))-----...(((------((((....)).)))))))))))..----... ( -29.70) >DroSec_CAF1 24177 97 + 1 CACCAAAUGACUGAGUGGAGGUCAAAUUGACGUCCAUU-CGGACUAAAGAUCAGGUCAUCUA-AAGGCUAGG-----ACAAUG------CUGAGACAU-----AUGACUUGUA-----UU ..........(((((((((.(((.....))).))))))-)))......(((((((((((((.-..(((....-----.....)------)).)))...-----.))))))).)-----)) ( -30.50) >DroSim_CAF1 25310 97 + 1 CACCAAAUGACUGAGUGGAGGUCAAAUUGACGUCCAUU-CGGACUAAAGAUCAGGUCAUCUA-AAGGCUAGG-----ACAGUG------CUGAGACAU-----AUGACUUAUA-----UU ..........(((((((((.(((.....))).))))))-)))..........(((((((((.-..(((....-----.....)------)).)))...-----.))))))...-----.. ( -28.10) >DroEre_CAF1 25234 107 + 1 CACCAAAUGACUGAGUGGAGGUCAAAUUGACGUGCAUU-CGGCCUGAAGAUCAGUUCAUAAA-AG--GCAGG-----ACAAUGAGACUUCUGAGACUUCUGGCUUUACUUGGA----UUU ..(((((((((((((((.(.(((.....))).).))))-))).(((.....))).)))).((-((--.((((-----(...(.((....)).)...))))).))))..)))).----... ( -30.90) >DroAna_CAF1 24733 109 + 1 CAGCCGAUGACUGAGUGGAGGUCAAAUGGUCCUCAAUUGCAGUCUGAAGGU-----UAUCAAUAAAGAGAGGUUGCUUUAGUG------CUUAAAUUUAAACAAGGACUUUUCGAAUGUA .((((...((((((((.((((.(.....).)))).))).)))))....)))-----).........((((((((((......)------)(((....))).....))))))))....... ( -25.50) >consensus CACCAAAUGACUGAGUGGAGGUCAAAUUGACGUCCAUU_CGGACUAAAGAUCAGGUCAUCUA_AAAGCUAGG_____ACAAUG______CUGAGACAU_____AUGACUUGUA_____UU ..........(((((((((.(((.....))).)))))).))).............................................................................. (-11.12 = -11.56 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:18 2006