Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,307,746 – 21,307,838 |
Length | 92 |
Max. P | 0.813913 |
Location | 21,307,746 – 21,307,838 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.38 |
Mean single sequence MFE | -32.03 |
Consensus MFE | -29.54 |
Energy contribution | -29.43 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.08 |
Structure conservation index | 0.92 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21307746 92 + 27905053 UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACGGGCUCCUUCUCCUCGUCGUUGGCUGAACUGUUUGCUACUG ........((((.((((((((..((((((((....((((.....))))...(((.......)))..))))))))..)))))))).))))... ( -31.50) >DroSim_CAF1 36434 92 + 1 UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACAGGCUCCUUCUCCUCCUCGUUGGCUGAGCUGUUUGCUACUG ........((((.((((((((..(((((((.....((((.....))))...(((........)))..)))))))..)))))))).))))... ( -26.70) >DroYak_CAF1 37856 92 + 1 UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACGGGCUCCUUAUCCUCGUCGUUGGCUGAACUGUUGGCUACUG ........(((((((((((((..((((((((....((((.....))))...(((.......)))..))))))))..)))))))))))))... ( -37.90) >consensus UUUGGGACUGGCCAGCAGUUUCUCCAGCGGCACAAUGCGUAUUUUGCAAACGGGCUCCUUCUCCUCGUCGUUGGCUGAACUGUUUGCUACUG ........((((.((((((((..((((((((....((((.....))))...(((........))).))))))))..)))))))).))))... (-29.54 = -29.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:37 2006