| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,287,910 – 21,288,022 |
| Length | 112 |
| Max. P | 0.971247 |
| Location | 21,287,910 – 21,288,022 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.73 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -15.27 |
| Energy contribution | -15.16 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21287910 112 + 27905053 -----CUUUUGGGCUGUUAAUUUGCCA-AACAAUUGGCAGAUAGCCAGGCCAACGGAGAGACCAAAAGUCGAACCA--ACCGGAGCCAAGGAAGCUAACAAGGAAAAUAACCCAAGCUAG -----..((((((.((((.((((((((-(....)))))))))..((.(((...(((...(((.....)))......--.)))..))).((....)).....))..)))).)))))).... ( -30.00) >DroWil_CAF1 124200 96 + 1 UGCAUCUUUUGGGCUGUUAAUUUGCCACAACAAUUGGCAGAUAGCCAGAG------------CGAGAGUCGG----------GACCCC-AAAAACUAACAAA-GUCAAAACCCAAGCUAG .((..((((((..(((...((((((((.......))))))))...)))..------------))))))..((----------....))-.............-............))... ( -21.80) >DroAna_CAF1 100913 100 + 1 -----CU-UUGGGCUGUUAAUUUGCCA-AACAAUUGGCAGAUAGCCAGGCC-----------CAAGAGCCGCUUCCAGGCCACAGCCA-GGCAGCUAACAAG-AAAAUAACCCCAGCUAG -----.(-(((((((((((.(((((((-(....))))))))))))..))))-----------))))....(((.((.(((....))).-)).))).......-................. ( -33.10) >consensus _____CUUUUGGGCUGUUAAUUUGCCA_AACAAUUGGCAGAUAGCCAGGCC___________CAAGAGUCGA__C____CC_GAGCCA_GGAAGCUAACAAG_AAAAUAACCCAAGCUAG ........((((((((((....(((((.......)))))))))))).(((.................)))............................)))................... (-15.27 = -15.16 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:33 2006