Locus 7936

Sequence ID 3R_DroMel_CAF1
Location 21,270,898 – 21,271,009
Length 111
Max. P 0.796858
window12786

overview

Window 6

Location 21,270,898 – 21,271,009
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 98.20
Mean single sequence MFE -34.92
Consensus MFE -35.30
Energy contribution -34.92
Covariance contribution -0.37
Combinations/Pair 1.06
Mean z-score -1.85
Structure conservation index 1.01
SVM decision value 0.60
SVM RNA-class probability 0.796858
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21270898 111 - 27905053
ACGCUUGGUUAAUCCUUUAGCAACGGCAUCAAAGGCCGCCGAGAUGUAUCUCUCAGAUACUUGAGAGUGCCUCUCAGCCGAGUUGAGUGCAAUCGAAAAGUUUGCAUCGCU
..((((((((.............((((.......))))..((((.(((.(((((((....)))))))))).)))))))))))).((.(((((.(.....).)))))))... ( -36.80)
>DroSec_CAF1 107969 111 - 1
ACGCUUGGUUAAUCCUUUAGCAACGGCAUCAAAGGCCGCCGAGAUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAAAGUUUGCAUCGCU
..((((((((.............((((.......))))..((((.(((.(((((((....)))))))))).)))))))))))).((.(((((.(.....).)))))))... ( -34.20)
>DroSim_CAF1 98407 111 - 1
ACGCUUGGUUAAUCCUUUAGCAACGGCAUCAAAGGCCGCCGAGAUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAAAGUUUGCAUCGCU
..((((((((.............((((.......))))..((((.(((.(((((((....)))))))))).)))))))))))).((.(((((.(.....).)))))))... ( -34.20)
>DroYak_CAF1 105382 111 - 1
ACGCUUGGUUAACCCUUUAGCAACGGCAUCAAAGGCCGCCGAGAUGUAUCUCUCAAAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAAAGUUUGCAUCGUU
..((((((((.............((((.......))))..((((.(((.(((((((....)))))))))).)))))))))))).((.(((((.(.....).)))))))... ( -34.50)
>consensus
ACGCUUGGUUAAUCCUUUAGCAACGGCAUCAAAGGCCGCCGAGAUGUAUCUCUCAGAUACUUGAGAGUGCCUUUCAGCCGAGUUGAGUGCAAUCGAAAAGUUUGCAUCGCU
..((((((((.............((((.......))))..((((.(((.(((((((....)))))))))).)))))))))))).((.(((((.(.....).)))))))... (-35.30 = -34.92 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:32 2006