| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,270,677 – 21,270,795 |
| Length | 118 |
| Max. P | 0.825338 |
| Location | 21,270,677 – 21,270,795 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.04 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -19.72 |
| Energy contribution | -21.40 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.825338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21270677 118 - 27905053 ACUCCAGUGCUAUUUACAGACCGAAAAUAAAGUUUUAGCA-AAAGUUCGGCUAUGGCAAAAUGCAUUACCCAGCUCAUAGUUGA-AGAUGCAUUCAAUUCGCUGGUUAAAUUUCACAACU ...((((((((((....((.(((((......((....)).-....))))))))))))..((((((((...((((.....)))).-.))))))))......)))))............... ( -27.00) >DroSec_CAF1 107751 118 - 1 ACUCCAGUGCUAUUAACAGACCGAAAAUAAAGUUUUAGCC-AAAGUUCGGCUAUGGCAAAAUGCAUUACCCAGCUCAAAGUUGA-AGAUGCAUUCAAUUCGCUGGUUAAAUUUCACAACU ......(((...(((((....((((......((..(((((-.......)))))..))..((((((((...((((.....)))).-.))))))))...))))...)))))....))).... ( -27.80) >DroSim_CAF1 98182 118 - 1 ACUCCAGUGCUAUUAACAGACCGAAAAUAAAGUUUUAGCC-AAAGUUGGGCUAUGGCAAAAUGCAUUACCCAGCUCAAAGUUGA-AGAUGCAUUCAAUUCGCUGGUUAAAUUUCACAACU ......(((...(((((....((((......((..(((((-.......)))))..))..((((((((...((((.....)))).-.))))))))...))))...)))))....))).... ( -27.70) >DroYak_CAF1 105166 118 - 1 ACUCCAGUGCUAUUAACAGACCGAAAAUAAAGUUUUAGCC-AAAGUUCGGCUUUGGCUAAAUGCAUUACCCAGCUCAAAGUUGA-AGAUGCAUUCAAUUCGCUGGUUAAAUUUCACAACU ......(((...(((((....((((........(((((((-((((.....)))))))))))((((((...((((.....)))).-.)))))).....))))...)))))....))).... ( -31.70) >DroAna_CAF1 87333 113 - 1 ACUCCAGUGCCAUUAACGGCGC-AAAACAAACUUUUCCCCGAAACUUUGACAAUGGCGAAGUGCAU----CAGCUUCAAGUGGAGAGAUGCAUUUAAUUAGCUGUGCAAAUUUCAGAU-- ......(((((......)))))-.................((((.((((...(((((.((((((((----(..((((....)))).))))))))).....))))).))))))))....-- ( -31.90) >consensus ACUCCAGUGCUAUUAACAGACCGAAAAUAAAGUUUUAGCC_AAAGUUCGGCUAUGGCAAAAUGCAUUACCCAGCUCAAAGUUGA_AGAUGCAUUCAAUUCGCUGGUUAAAUUUCACAACU ...((((((((((....((.(((((......((....))......))))))))))))..((((((((...((((.....))))...))))))))......)))))............... (-19.72 = -21.40 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:31 2006