Locus 7934

Sequence ID 3R_DroMel_CAF1
Location 21,267,815 – 21,267,935
Length 120
Max. P 0.549534
window12784

overview

Window 4

Location 21,267,815 – 21,267,935
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.33
Mean single sequence MFE -18.66
Consensus MFE -15.72
Energy contribution -15.06
Covariance contribution -0.66
Combinations/Pair 1.11
Mean z-score -1.73
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.549534
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21267815 120 - 27905053
UUUUAUGGAAUUCCAAAACAACACUUAUACAAUUUCAAUUCAACUUUUGACAUCUUUUAAACGGCGAUUGUCAUAAGCAUCAACAUUUAGUGGUCUUUGCCAAGAGACCCAAAAAUACAA
.....(((....)))........(((((((((((((((........))))...............)))))).)))))............(.(((((((....)))))))).......... ( -17.56)
>DroSec_CAF1 104955 120 - 1
UUUUAUGGAAUUCCAAAACAGCACUUAUACUAUUUCAAUUCAACUUUUGACAUCUUUUAAACUGCAAUUGUCAUAAGCAUCAACAUUUAGUGGUUUUUGCCAAGAGACCCAAAAAUACAA
.....(((....))).............((((...........(((.(((((................))))).)))..........))))(((((((....)))))))........... ( -14.99)
>DroYak_CAF1 102311 119 - 1
UUUAAUGGAAUUCCA-AACAACACUCAAAUAAUUUAUAUUCAACUUUUGACAUCUCUUAAACUACAAAUGUCAAAAGCAUCAACAUUUUGUGGUUUUCGACAGGAGACCCAAAAAUGCAA
.....(((....)))-............................(((((((((..............)))))))))((((.....(((((.(((((((....)))))))))))))))).. ( -23.44)
>consensus
UUUUAUGGAAUUCCAAAACAACACUUAUACAAUUUCAAUUCAACUUUUGACAUCUUUUAAACUGCAAUUGUCAUAAGCAUCAACAUUUAGUGGUUUUUGCCAAGAGACCCAAAAAUACAA
.....(((....)))............................(((.(((((................))))).)))............(.(((((((....)))))))).......... (-15.72 = -15.06 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:30 2006