Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,257,453 – 21,257,616 |
Length | 163 |
Max. P | 0.999119 |
Location | 21,257,453 – 21,257,558 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.23 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -10.06 |
Energy contribution | -10.42 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -2.14 |
Structure conservation index | 0.45 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.967067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21257453 105 + 27905053 U-----UGUCAUCGUUUUGGCUUUUGUUUUCUUGAUUUUC-UUUCGGGCC---GU------CUUUUCCGCCCCACUGCCACAGCCUGUCUGUCCUAAACAAAUAACUUUUCGAUGGCAUU .-----((((((((....(...(((((((...........-....((((.---(.------.....).)))).......((((.....))))...)))))))...)....)))))))).. ( -23.70) >DroSec_CAF1 82396 105 + 1 U-----UGUCAUCGUUUUGGCUUUUGUUUUCUUGAUUUUC-UUUCGGGCC---GU------CUUUUCCGCCCCAGUGCCACAGCCUGUCUGUCCUAAACAAAUAACUUUUCGAUGGCAUU .-----((((((((....(...(((((((....(((....-....((((.---(.------.....).))))(((.((....)))))...)))..)))))))...)....)))))))).. ( -26.70) >DroWil_CAF1 84908 108 + 1 CAUCAACGUCAUUAUCUUCUAAUUUGUUUUCAGAAUA-UC-AAUAGAGAA---GUAAAAUUCCAUUCCGUUCU-UUGUC---GCUU---UUCACUUUUCACAUAACUUUUCAAUGGCAUU .......((((((.........((((....))))...-..-....(((((---((.(((..(.((........-..)).---)..)---)).)))))))............))))))... ( -11.80) >DroYak_CAF1 91877 104 + 1 U-----UGUCAUCAUUUU-GCUUUUGUUUUCUUGAUUUUC-UUUAGGGUC---GU------CUUUUCCGCCCCAGUGCCACAGCCUGUCUGUCCUAAACAAAUAACUUUUCGAUGGCAUU .-----(((((((.....-...(((((((....(((....-....((((.---(.------.....).))))(((.((....)))))...)))..))))))).........))))))).. ( -20.83) >DroAna_CAF1 76372 105 + 1 U-----UGUCAUCAUUU-GCUCUUUGUUUUCUUGAUGCCAUUUUUGGGCCGGCGU------CGCUUUCGCCCCAGUGACAC---CAGCCUGUCCUAAACAAAUAACUUUCCGAUGGCAUU .-----(((((((....-....(((((((....(((.........((((.((.((------((((........)))))).)---).)))))))..))))))).........))))))).. ( -27.83) >consensus U_____UGUCAUCAUUUUGGCUUUUGUUUUCUUGAUUUUC_UUUAGGGCC___GU______CUUUUCCGCCCCAGUGCCACAGCCUGUCUGUCCUAAACAAAUAACUUUUCGAUGGCAUU .......((((((.........(((((((................((((...................))))....((....))...........))))))).........))))))... (-10.06 = -10.42 + 0.36)
Location | 21,257,453 – 21,257,558 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.23 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -8.64 |
Energy contribution | -10.20 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.18 |
Mean z-score | -1.91 |
Structure conservation index | 0.36 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21257453 105 - 27905053 AAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCAGUGGGGCGGAAAAG------AC---GGCCCGAAA-GAAAAUCAAGAAAACAAAAGCCAAAACGAUGACA-----A ..((.(((((...((((.((((((...))))))..)))).((((...(((.((......------.)---).)))((..-.....))............))))...))))).))-----. ( -25.30) >DroSec_CAF1 82396 105 - 1 AAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAG------AC---GGCCCGAAA-GAAAAUCAAGAAAACAAAAGCCAAAACGAUGACA-----A ..((.(((((....(((.(((((((........(((((....)).)))((((.(.....------.)---.))))....-...........)))))))))).....))))).))-----. ( -25.30) >DroWil_CAF1 84908 108 - 1 AAUGCCAUUGAAAAGUUAUGUGAAAAGUGAA---AAGC---GACAA-AGAACGGAAUGGAAUUUUAC---UUCUCUAUU-GA-UAUUCUGAAAACAAAUUAGAAGAUAAUGACGUUGAUG .....(((..(...(((((..((.(((((((---(..(---.....-...........)..))))))---)).))....-..-..((((((.......))))))....))))).)..))) ( -14.49) >DroYak_CAF1 91877 104 - 1 AAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAG------AC---GACCCUAAA-GAAAAUCAAGAAAACAAAAGC-AAAAUGAUGACA-----A ..((.(((((....(((.(((((((........(((((....)).)))(((((......------.)---).)))....-...........))))))))))-....))))).))-----. ( -21.70) >DroAna_CAF1 76372 105 - 1 AAUGCCAUCGGAAAGUUAUUUGUUUAGGACAGGCUG---GUGUCACUGGGGCGAAAGCG------ACGCCGGCCCAAAAAUGGCAUCAAGAAAACAAAGAGC-AAAUGAUGACA-----A ..((.(((((....(((.(((((((......(((((---(((((......((....)))------)))))))))((....)).........))))))).)))-...))))).))-----. ( -32.20) >consensus AAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAG______AC___GGCCCGAAA_GAAAAUCAAGAAAACAAAAGCCAAAAUGAUGACA_____A ..((.(((((........(((((((...((((.....)))).......((((...................))))................)))))))........))))).))...... ( -8.64 = -10.20 + 1.56)
Location | 21,257,488 – 21,257,581 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 89.96 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -18.34 |
Energy contribution | -19.62 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.04 |
Mean z-score | -2.62 |
Structure conservation index | 0.67 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21257488 93 - 27905053 AAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCAGUGGGGCGGAAAAGAC---GGCCCGAAA- ..((((..((((((((((..((.......))..))))))))))..))))..((((.....)))).....((((.((.......)---).))))...- ( -25.80) >DroSec_CAF1 82431 93 - 1 AAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAGAC---GGCCCGAAA- ..((((..((((((((((..((.......))..))))))))))..)))).......(((((....)).)))((((.(......)---.))))....- ( -27.50) >DroSim_CAF1 85167 93 - 1 AAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGCUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAGAC---GGCCCGAAA- ..(((..(((((((((((..((.......))..)))))))))))..))).......(((((....)).)))((((.(......)---.))))....- ( -24.30) >DroYak_CAF1 91911 93 - 1 AAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAGAC---GACCCUAAA- ..((((..((((((((((..((.......))..))))))))))..)))).......(((((....)).)))(((((.......)---).)))....- ( -25.00) >DroAna_CAF1 76406 90 - 1 AAU----GAAUAACUUUCUAGUCAAUGCCAUCGGAAAGUUAUUUGUUUAGGACAGGCUG---GUGUCACUGGGGCGAAAGCGACGCCGGCCCAAAAA ((.----.((((((((((..((.......))..))))))))))..)).......(((((---(((((......((....))))))))))))...... ( -34.00) >consensus AAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUGUGGCACUGGGGCGGAAAAGAC___GGCCCGAAA_ ..((((((((((((((((..((.......))..))))))))))))))))..((((.....)))).......((((.............))))..... (-18.34 = -19.62 + 1.28)
Location | 21,257,518 – 21,257,616 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 84.18 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -26.16 |
Energy contribution | -26.04 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -3.50 |
Structure conservation index | 0.82 |
SVM decision value | 3.38 |
SVM RNA-class probability | 0.999119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21257518 98 - 27905053 GAGUGGCCUUAUUUGGGCAAAAACGUCUGGGCUGAAAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUG ..((.((((.....))))....))(((((..(((...((((..((((((((((..((.......))..))))))))))..))))...))).))))).. ( -31.20) >DroSec_CAF1 82461 98 - 1 GAGUGGCCCCAUUUGGGCCAAAACGUCUGGGCUGAAAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUG ...((((((.....))))))....(((((..(((...((((..((((((((((..((.......))..))))))))))..))))...))).))))).. ( -36.00) >DroSim_CAF1 85197 98 - 1 GAGUGGCCCCAUUUGGGCCAAAACGUCUGGGCUGAAAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGCUUAGGACAGACAGGCUG ...((((((.....))))))....(((((..(((...(((..(((((((((((..((.......))..)))))))))))..)))...))).))))).. ( -32.80) >DroYak_CAF1 91941 98 - 1 GAGUGGCCUCAGUUGGGCCAAAAUGUCUGGGCUGAAAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUG ...((((((.....))))))....(((((..(((...((((..((((((((((..((.......))..))))))))))..))))...))).))))).. ( -33.70) >DroAna_CAF1 76440 77 - 1 GCGC--------------UGGCAUGUCUGGGUGGAAAU----GAAUAACUUUCUAGUCAAUGCCAUCGGAAAGUUAUUUGUUUAGGACAGGCUG---G ...(--------------..((.(((((......(((.----.((((((((((..((.......))..))))))))))..))).))))).))..---) ( -25.30) >consensus GAGUGGCCCCAUUUGGGCCAAAACGUCUGGGCUGAAAUGAAUGAAUAACUUUUUAGUCAAUGCCAUCGAAAAGUUAUUUGUUUAGGACAGACAGGCUG ...((((((.....))))))....(((((..(((((......(((((((((((..((.......))..))))))))))).)))))..)))))...... (-26.16 = -26.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:23 2006