Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,713,446 – 2,713,537 |
Length | 91 |
Max. P | 0.811256 |
Location | 2,713,446 – 2,713,537 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -18.85 |
Energy contribution | -18.13 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.32 |
Mean z-score | -2.04 |
Structure conservation index | 0.77 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2713446 91 + 27905053 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCUAAUCAAGAGAUUCCUU-UUU------------------------CUUUGGCUAAUCCCCGUUUUGGCCU---- ............(((..(((((....)))))..))).......((((.....)))).......-...------------------------....((((((........)))))).---- ( -22.80) >DroSec_CAF1 23761 92 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCUAAUCAAGAGAUUCCUUUUUU------------------------CUUUGGCUAAUCCCUGUUUUGGCUU---- ............(((..(((((....)))))..))).......((((.....))))...........------------------------....((((((........)))))).---- ( -20.20) >DroSim_CAF1 24894 92 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCUAAUCAAGAGAUUCCUUUUUU------------------------CUUUGGCUAAUCCCCGUUUUGGCCU---- ............(((..(((((....)))))..))).......((((.....))))...........------------------------....((((((........)))))).---- ( -22.80) >DroEre_CAF1 24811 91 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCCAAUCAAGAGAUUCCUC-UUU------------------------CUUUGGCUAAUCCCCGUUUGGGCCC---- (((.........(((..(((((....)))))..)))..........(((..(((((....)))-)).------------------------..))))))....(((....)))...---- ( -22.90) >DroYak_CAF1 24629 91 + 1 AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUGCUCCAAUCAAGAGAUGCCUU-UUC------------------------CUUUGGCUAAUCCCCGUUUUGGUUC---- (((((.......(((..(((((....)))))..)))....)))))((((....((...(((..-...------------------------....)))...))......))))...---- ( -22.30) >DroAna_CAF1 24265 119 + 1 ACCCACUUCCUUUGGUGGCGCUCAAAAGCGUCGCCAUUAAUUACUUCAAUCAAAAGAUUCCUU-UUUAUUCGGCUCUCUGGAGGUGUUUGGCUCUGGUUAAUCUCCAUUUCGGCCAUGCC ...(((((((..((((((((((....)))))))))).........(((((.(((((....)))-)).))).))......)))))))...(((..((((..(........)..)))).))) ( -35.40) >consensus AGCGACUUCCUUUGGUGGCGCUCAAAAGCGUUGCUAUUAAUUACUCCAAUCAAGAGAUUCCUU_UUU________________________CUUUGGCUAAUCCCCGUUUUGGCCU____ ............((((((((((....)))))))))).......(((.......))).......................................((((((........))))))..... (-18.85 = -18.13 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:17 2006