Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,255,083 – 21,255,178 |
Length | 95 |
Max. P | 0.548244 |
Location | 21,255,083 – 21,255,178 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 90.29 |
Mean single sequence MFE | -16.20 |
Consensus MFE | -13.82 |
Energy contribution | -13.86 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.28 |
Structure conservation index | 0.85 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21255083 95 - 27905053 UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG ......(((((....)))))((((((((...............(((....)))((((.((((............)))).)))).))))))))... ( -17.00) >DroSec_CAF1 80106 83 - 1 UACACAAU------------GCCAUUCUGAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG ....(((.------------(((((((((..............(((....)))((((.((((............)))).)))))))))))))))) ( -19.20) >DroSim_CAF1 82823 95 - 1 UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG ......(((((....)))))((((((((...............(((....)))((((.((((............)))).)))).))))))))... ( -17.00) >DroYak_CAF1 89664 95 - 1 UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAAGCGAGCAGCGAAACAGAAUGGCUUG ......(((((....)))))((((((((..(((........))).......(((((.(((((........)))))....)))))))))))))... ( -19.10) >DroAna_CAF1 74281 92 - 1 UACACAAAGCUCUUC---AUGCAAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACGAAGCAGCGAAACAGAAUGGUUCG ........((.....---..))......................(((...((((((.((.((............)))).))))))..)))..... ( -8.70) >consensus UACACAAUGCUCUCUAGUAUGCCAUUCUAAUAAUAUAAACUUUACAUAAAUGUUUUCCUUGCAAAUAGAACCGAGCAGCGAAACAGAAUGGCUUG ....................((((((((...............(((....)))((((.((((............)))).)))).))))))))... (-13.82 = -13.86 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:17 2006