| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,254,116 – 21,254,210 |
| Length | 94 |
| Max. P | 0.906794 |
| Location | 21,254,116 – 21,254,210 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 97.87 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -22.48 |
| Energy contribution | -22.98 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21254116 94 - 27905053 CUUGUGAUUGGCCCCCAACAGCCUUUCGCCCAACUAAUUGAACAGGCUUGAGCUGCUGUCAGACACAGAGCACACACCCAGUCACAUAAAUAAA ..(((((((((........(((((((((..........)))).)))))...(((.((((.....)))))))......)))))))))........ ( -25.80) >DroSec_CAF1 79151 94 - 1 CUAGUGAUUGGCCCCCAACAGCCUUUCGCCCAACUAAUUGAACAGGCUUGAGCUGCUGUCAGACACAGAGCACACACCCAGUCACAUAAAUAAA ...((((((((........(((((((((..........)))).)))))...(((.((((.....)))))))......))))))))......... ( -25.30) >DroSim_CAF1 81854 94 - 1 CUUGUGAUUGGCCCCCAACAGCCUUUCGCCCAACUAAUUGAACAGGCUUGAGCUGCUGUCAGACACAGAGCACACACCCAGUCACAUAAAUAAA ..(((((((((........(((((((((..........)))).)))))...(((.((((.....)))))))......)))))))))........ ( -25.80) >DroYak_CAF1 88757 94 - 1 CUUGUGAUUGGCCCCCAACAUCCGUUCGCCCAACUAAUUGAACAGGCUUGAGCUGCUGUCAGACACAGAGCACACAUCCAGUCACAUAAAUAAA ..(((((((((.......((.(((((((..........))))).))..)).(((.((((.....)))))))......)))))))))........ ( -23.40) >consensus CUUGUGAUUGGCCCCCAACAGCCUUUCGCCCAACUAAUUGAACAGGCUUGAGCUGCUGUCAGACACAGAGCACACACCCAGUCACAUAAAUAAA ...((((((((........(((((((((..........)))).)))))...(((.((((.....)))))))......))))))))......... (-22.48 = -22.98 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:16 2006